Ss1.1-Mixn-0011h20.5
|
TGGACAACTCCCCTGGACCATCTCACTGGCCCCAGAGGGCCCGGCGCAAGCACCTCTTCA
CCCTGCAGACAGTGAACTCCAACGGGACCAGCGACCGCTCGACCTTCAACGAGGATACTC
ATGCCCAGCCGTACATCGCCATCGACTGGGAGCCAGAGATGAAGAAGCGGTACTATGACG
AGGTGGAGGCCGAGGGCTACGTGAAGCATGACTGCGTCGGCTACGTGCTGAAGAAGGCTC
CGGTGCGGCTGCAGGAGTGCATCGAGCTCTTCACCACTGTGGAGACCCTGGAGAAGGAAA
ACCCCTGGTACTGCCCCACCTGCAAGCAGCACCAGCTGGCCACCAAGAAGCTGGACCTGT
GGATGCTGCCCGAGACGCTCATCATCCACCTGAAGCGCTTCTCCTACACCAAGTTCTCCC
GCGAGAAGCTGGACACTCTTGTGGAGTTTCCCATCCGGGACCTGGACTTCTCGGAGTTCG
TCATCAAGCCGCAGAACGAGTCGGCCCCAGAGCTGTACAAATACGATCTCATCGCGGTTT
CCAACCATTACGGGGGCCTGCGTGACGGACACTACACCACGTTCGCCTGCAACAAGGACA
GCGGTCAGTGGCACTACTTTGATGACAACAGCGTCTCGCCCGTGACGGAGAATCAGATCG
AGTCCAAGGCAGCCTACGTCCTCTTCTACCAACGCCAGGACGTGGCCCGTCGCCTGCAGC
CCCAGCCCGGCTTCTCTGAGCGCCCCGCGTCCCCCGCCTGTGGTATCCCGCCCAGCTCTG
AGTTCATGGATGTAAACTGAGGCCCTGGCCCTGCCACAGGGAAGGAAGCCATCTCCGCTC
CCTTCCTTCCCGAGCCCACCCCTGTCCTCTGACCGTGTTAGGTACCCGTGCCAGGTGTCA
CAGGCTTCGTCGTGGCTACTGTTCTCCTGTGCTGCTATTTCGCTCTCTCCCGGGGAAGAA
GAGGTCGTGTCTCCCTCCAGCAGTGTGTTCCCCACCTGTGTTTGCCCCTTAGAGCCTTGC
CCTTCCCTTCTATTCTCTATTTATGGTTGTCTCCTGCCCCCTTGTCCTCACCCTGGGGTG
TCCTGAGGGGGTGGGGGGGGCGCACCCGAACACAGAGTGTATTTTCTTATTGAAACCCTT
TTCCTTGCGCTGTGTATATATAAAAGTGCCAGTGTG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGGACAACTCCCCTGGACCATCTCACTGGCCCCAGAGGGCCCGGCGCAAGCACCTCTTCA
CCCTGCAGACAGTGAACTCCAACGGGACCAGCGACCGCTCGACCTTCAACGAGGATACTC
ATGCCCAGCCGTACATCGCCATCGACTGGGAGCCAGAGATGAAGAAGCGGTACTATGACG
AGGTGGAGGCCGAGGGCTACGTGAAGCATGACTGCGTCGGCTACGTGCTGAAGAAGGCTC
CGGTGCGGCTGCAGGAGTGCATCGAGCTCTTCACCACTGTGGAGACCCTGGAGAAGGAAA
ACCCCTGGTACTGCCCCACCTGCAAGCAGCACCAGCTGGCCACCAAGAAGCTGGACCTGT
GGATGCTGCCCGAGACGCTCATCATCCACCTGAAGCGCTTCTCCTACACCAAGTTCTCCC
GCGAGAAGCTGGACACTCTTGTGGAGTTTCCCATCCGGGACCTGGACTTCTCGGAGTTCG
TCATCAAGCCGCAGAACGAGTCGGCCCCAGAGCTGTACAAATACGATCTCATCGCGGTTT
CCAACCATTACGGGGGCCTGCGTGACGGACACTACACCACGTTCGCCTGCAACAAGGACA
GCGGTCAGTGGCACTACTTTGATGACAACAGCGTCTCGCCCGTGACGGAGAATCAGATCG
AGTCCAAGGCAGCCTACGTCCTCTTCTACCAACGCCAGGACGTGGCCCGTCGCCTGCAGC
CCCAGCCCGGCTTCTCTGAGCGCCCCGCGTCCCCCGCCTGTGGTATCCCGCCCAGCTCTG
AGTTCATGGATGTAAACTGAGGCCCTGGCCCTGCCACAGGGAAGGAAGCCATCTCCGCTC
CCTTCCTTCCCGAGCCCACCCCTGTCCTCTGACCGTGTTAGGTACCCGTGCCAGGTGTCA
CAGGCTTCGTCGTGGCTACTGTTCTCCTGTGCTGCTATTTCGCTCTCTCCCGGGGAAGAA
GAGGTCGTGTCTCCCTCCAGCAGTGTGTTCCCCACCTGTGTTTGCCCCTTAGAGCCTTGC
CCTTCCCTTCTATTCTCTATTTATGGTTGTCTCCTGCCCCCTTGTCCTCACCCTGGGGTG
TCCTGAGGGGGTGGGGGGGGCGCACCCGAACACAGAGTGTATTTTCTTATTGAAACCCTT
TTCCTTGCGCTGTGTATATATAAAAGTGCCAGTGTG
|
|
gi|543824|sp|Q01988|UBP11_CANFA |
Protein identifier
|
gi|543824|sp|Q01988|UBP11_CANFA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-1176, gnl|bosTau2|chr27 (17722559-17723730) |
|
1-1176, gnl|Mm7|chrX (19151300-19153404) |
| |
|
307-458, gnl|bosTau2|chr22 (37755558-37755407) |
|
307-458, gnl|canFam2|chr20 (42946819-42946645) |
|
307-458, gnl|danRer3|chr6 (25329773-25329937) |
|
307-458, gnl|dasNov1|scaffold_220552 (2777-2938) |
|
307-458, gnl|echTel1|scaffold_287447 (10154-10330) |
|
307-458, gnl|fr1|chrUn (191068049-191067885) |
|
307-458, gnl|galGal2|chr12 (2490723-2490888) |
|
307-458, gnl|hg17|chr3 (49296418-49296587) |
|
307-458, gnl|Hg17|chr3 (49296574-49296423) |
|
307-458, gnl|loxAfr1|scaffold_10905 (53503-53672) |
|
307-458, gnl|mm7|chr9 (108118561-108118393) |
|
307-458, gnl|Mm7|chr9 (108118404-108118555) |
|
307-458, gnl|monDom2|scaffold_5 (75984900-75984732) |
|
307-458, gnl|oryCun1|scaffold_186837 (331-162) |
|
307-458, gnl|panTro1|chr2 (50819791-50819960) |
|
307-458, gnl|rheMac2|chr2 (87164673-87164504) |
|
307-458, gnl|rn3|chr16_random (1111125-1110957) |
|
307-458, gnl|tetNig1|chr11 (6194281-6194448) |
|
307-458, gnl|xenTro1|scaffold_193 (1011914-1011753) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-1176, gnl|bosTau2|chr27 (17722559-17723730) |
|
1-1176, gnl|Mm7|chrX (19151300-19153404) |
| |
|
307-458, gnl|bosTau2|chr22 (37755558-37755407) |
|
307-458, gnl|canFam2|chr20 (42946819-42946645) |
|
307-458, gnl|danRer3|chr6 (25329773-25329937) |
|
307-458, gnl|dasNov1|scaffold_220552 (2777-2938) |
|
307-458, gnl|echTel1|scaffold_287447 (10154-10330) |
|
307-458, gnl|fr1|chrUn (191068049-191067885) |
|
307-458, gnl|galGal2|chr12 (2490723-2490888) |
|
307-458, gnl|hg17|chr3 (49296418-49296587) |
|
307-458, gnl|Hg17|chr3 (49296574-49296423) |
|
307-458, gnl|loxAfr1|scaffold_10905 (53503-53672) |
|
307-458, gnl|mm7|chr9 (108118561-108118393) |
|
307-458, gnl|Mm7|chr9 (108118404-108118555) |
|
307-458, gnl|monDom2|scaffold_5 (75984900-75984732) |
|
307-458, gnl|oryCun1|scaffold_186837 (331-162) |
|
307-458, gnl|panTro1|chr2 (50819791-50819960) |
|
307-458, gnl|rheMac2|chr2 (87164673-87164504) |
|
307-458, gnl|rn3|chr16_random (1111125-1110957) |
|
307-458, gnl|tetNig1|chr11 (6194281-6194448) |
|
307-458, gnl|xenTro1|scaffold_193 (1011914-1011753) |
|
elu (0.385356) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
cov (0.132153) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
eje (0.0988338) |
|
elu (0.385356) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
cov (0.132153) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
eje (0.0988338) |
