Non-Coding RNA Search

Ss1.1-Mixn-0011k02.5

Sequence:


               
               TATCACCCTCCCTCAGCTCCTAAATGCAGGGCGTTTCCCTCTTGAGCTGACACACTTGCC
GCCTCCTTGTCTGCATCTAGCTGGGCACAGAGAAACATCCAGACCCTGCAAAGGGTAGGT
GAGACACTACAGCTCCACCTGCAGTGGACCTGAAGATGGCCCTTCTTCCAACCAATCAGG
ATCTCATTTCTGCAGGAATAAAGGAATTTAACATTCTGCTGAATCAGCAGGTCTTCTCAG
AGCCTGCCATCCCCGAAGAGGCCATGGTGACTGTGGTGAATGACTGGATGGACTTGTACC
TCAACTACTACAAGAAGAAGATGGTGGGGGAGCAGGAAGAGCAGGACAAGGCTCTGCAGG
AACTTCGCCAAGAGCTGAATACTCTGTCTGCCAGTTTCCTGGACAAATACAGGAACTTCC
TCAAGTCCTTGTGAGCAACCCCATCACCCATGGCCTTTCCCCTGGCGGGGAGACCCAGAT
TGCATGTCTAAGAAACCCTTAAATGCCGCTTCTGTGTTTGTCAAGTCCCCAGGCTCTGCT
TTTTCGGGGTGTTATGGCGCCCTGACCCCTCAATAAAGACCAGTCCTGGTTTTGATGGTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCACCCTCCCTCAGCTCCTAAATGCAGGGCGTTTCCCTCTTGAGCTGACACACTTGCC
GCCTCCTTGTCTGCATCTAGCTGGGCACAGAGAAACATCCAGACCCTGCAAAGGGTAGGT
GAGACACTACAGCTCCACCTGCAGTGGACCTGAAGATGGCCCTTCTTCCAACCAATCAGG
ATCTCATTTCTGCAGGAATAAAGGAATTTAACATTCTGCTGAATCAGCAGGTCTTCTCAG
AGCCTGCCATCCCCGAAGAGGCCATGGTGACTGTGGTGAATGACTGGATGGACTTGTACC
TCAACTACTACAAGAAGAAGATGGTGGGGGAGCAGGAAGAGCAGGACAAGGCTCTGCAGG
AACTTCGCCAAGAGCTGAATACTCTGTCTGCCAGTTTCCTGGACAAATACAGGAACTTCC
TCAAGTCCTTGTGAGCAACCCCATCACCCATGGCCTTTCCCCTGGCGGGGAGACCCAGAT
TGCATGTCTAAGAAACCCTTAAATGCCGCTTCTGTGTTTGTCAAGTCCCCAGGCTCTGCT
TTTTCGGGGTGTTATGGCGCCCTGACCCCTCAATAAAGACCAGTCCTGGTTTTGATGGTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|28628845|gb|AAO49382.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|28628845|gb|AAO49382.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               349-468, - strand, RNAz p=0.710135

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               349-468, - strand, RNAz p=0.710135

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-158, gnl|bosTau2|chr25 (23317696-23317843)
               

               
               1-158, gnl|Hg17|chr16 (31446639-31446787)
               


               
               228-599, gnl|bosTau2|chr25 (23318753-23319120)
               

               
               228-599, gnl|canFam2|chr6 (19753206-19752658)
               

               
               228-599, gnl|dasNov1|scaffold_94761 (2560-2050)
               

               
               228-599, gnl|echTel1|scaffold_292391 (14215-14923)
               

               
               228-599, gnl|hg17|chr16 (31447052-31447597)
               

               
               228-599, gnl|Hg17|chr16 (31447277-31447625)
               

               
               228-599, gnl|loxAfr1|scaffold_108011 (1208-668)
               

               
               228-599, gnl|monDom2|scaffold_19 (7604225-7603755)
               

               
               228-599, gnl|panTro1|chr18 (32257153-32257698)
               

               
               228-599, gnl|rheMac2|chr20 (29622545-29623104)
               

               
               228-599, gnl|rn3|chr1 (187710978-187711526)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-158, gnl|bosTau2|chr25 (23317696-23317843)
               

               
               1-158, gnl|Hg17|chr16 (31446639-31446787)
               


               
               228-599, gnl|bosTau2|chr25 (23318753-23319120)
               

               
               228-599, gnl|canFam2|chr6 (19753206-19752658)
               

               
               228-599, gnl|dasNov1|scaffold_94761 (2560-2050)
               

               
               228-599, gnl|echTel1|scaffold_292391 (14215-14923)
               

               
               228-599, gnl|hg17|chr16 (31447052-31447597)
               

               
               228-599, gnl|Hg17|chr16 (31447277-31447625)
               

               
               228-599, gnl|loxAfr1|scaffold_108011 (1208-668)
               

               
               228-599, gnl|monDom2|scaffold_19 (7604225-7603755)
               

               
               228-599, gnl|panTro1|chr18 (32257153-32257698)
               

               
               228-599, gnl|rheMac2|chr20 (29622545-29623104)
               

               
               228-599, gnl|rn3|chr1 (187710978-187711526)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               nbm (3.17839)
               

               
               eli (2.42903)
               

               
               nca (1.36874)
               

               
               fli (0.811524)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (3.17839)
               

               
               eli (2.42903)
               

               
               nca (1.36874)
               

               
               fli (0.811524)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

	1-158, gnl\|bosTau2\|chr25 (23317696-23317843)
	1-158, gnl\|Hg17\|chr16 (31446639-31446787)

	228-599, gnl\|bosTau2\|chr25 (23318753-23319120)
	228-599, gnl\|canFam2\|chr6 (19753206-19752658)
	228-599, gnl\|dasNov1\|scaffold_94761 (2560-2050)
	228-599, gnl\|echTel1\|scaffold_292391 (14215-14923)
	228-599, gnl\|hg17\|chr16 (31447052-31447597)
	228-599, gnl\|Hg17\|chr16 (31447277-31447625)
	228-599, gnl\|loxAfr1\|scaffold_108011 (1208-668)
	228-599, gnl\|monDom2\|scaffold_19 (7604225-7603755)
	228-599, gnl\|panTro1\|chr18 (32257153-32257698)
	228-599, gnl\|rheMac2\|chr20 (29622545-29623104)
	228-599, gnl\|rn3\|chr1 (187710978-187711526)

	nbm (3.17839)
	eli (2.42903)
	nca (1.36874)
	fli (0.811524)
	csp (0.161186)
	ute (0.132784)
	ese (0.126502)