Ss1.1-Mixn-0011m13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGATGGGCAGAAGGACTGCAGCGATGGCTCGGATGAGAAGGACTGTGACTGTGGGCTTC GCGCGTTCACCAGGCAGTCTCGGGTCGTCGGGGGTGAGAATGCGGATGAAGGCGAGTGGC CCTGGCAGGTGAGCCTCCACGCCCTGGGCCAGGGCCACGTGTGCGGGGCTTCCCTCATCG CCCCCAGCTGGATGGTGTCTGCAGCGCACTGCTTCGTTGACAGCAGAGGATTCAGGTACT CCGACGCCAAAATGTGGACCGCCTTCCTGGGCCTGCACGACCAGAGCAAGCGCAGCGTCC CGGGGGTGCAGGAGCGCCGCCTGCAGCGCATCACGTTCCACCCCTTCTTCAACGACTTCA CCTTCGATTACGACATAGCGCTGCTGCAGTTGGACCAGCCGGTCGAGTACAGCCCCACCG TGCGGCCCATCTGCCTGCCCGACGCCTCGCACACCTTCCCCACCGGCAAGGCCATCTGGG TCACCGGCTGGGGCCACACGCAGGAGGGAGGCACCGGGGCACTGATCCTGCAGAAGGGTG AGATCCGCGTCATCAACCAGACCACGTGCGAGCGCTTGCTGCCGCAGCAGATCACGGACC GCATGATGTGCGTGGGCTACCTCAGCGGCGGCGTGGACGCCTGCCAGGGCGATTCCGGGG GCCCCCTGTCCAGCGTGGAGTCAGATGGGCGGATGTTCCTGGCCGGCGTGGTGAGCTGGG GCGACGGCTGTGCACAGAGGAACAAGCCAGGCGTGTACACGAGGCTCCCCGTGTTTCGGA ACTGGATTAAAGAGCAGACTGGGGTGTAGCTGCAAGGCCTGCCCCCCAGCCACCCCAGCG CACACACCTGCGGCCTGAGGACCGGACTGCTCACTGTACCCGCCCCGCGGGCCCCCAGAA CCCAGGCTGTGAACTGAATCCCGGAGACTTGAGATGGAGACTCGCTTGGAGACCGCTCAC CTGCCGCAGCCTCCGAAGCGGGGGAGCTAGAGATGCGGAGGGGAGGACATCCATCGGCAG TGCCCCCGACTCCGACCCCAAGCTGGGCGGAGGCGCTTTCCCGAAGGTCTGCTTCCTCTG CCCCTGATAGAGGAGCAGCTGTCACGTTGCCCCTCGCGGGGCTGGTGGGGCACCGTGGCT TACGGTCTCCGGGAAACCCAGGCCGGAAGGATCATGGAAGTCCGACGGGTCCAAGATTTG AATGTTTGACCAGCTCCCAGGGTGGGGTTCAGTGTGTGTATTTGTGTGTATGTAGTAAAA AAACACTGTATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGATGGGCAGAAGGACTGCAGCGATGGCTCGGATGAGAAGGACTGTGACTGTGGGCTTC GCGCGTTCACCAGGCAGTCTCGGGTCGTCGGGGGTGAGAATGCGGATGAAGGCGAGTGGC CCTGGCAGGTGAGCCTCCACGCCCTGGGCCAGGGCCACGTGTGCGGGGCTTCCCTCATCG CCCCCAGCTGGATGGTGTCTGCAGCGCACTGCTTCGTTGACAGCAGAGGATTCAGGTACT CCGACGCCAAAATGTGGACCGCCTTCCTGGGCCTGCACGACCAGAGCAAGCGCAGCGTCC CGGGGGTGCAGGAGCGCCGCCTGCAGCGCATCACGTTCCACCCCTTCTTCAACGACTTCA CCTTCGATTACGACATAGCGCTGCTGCAGTTGGACCAGCCGGTCGAGTACAGCCCCACCG TGCGGCCCATCTGCCTGCCCGACGCCTCGCACACCTTCCCCACCGGCAAGGCCATCTGGG TCACCGGCTGGGGCCACACGCAGGAGGGAGGCACCGGGGCACTGATCCTGCAGAAGGGTG AGATCCGCGTCATCAACCAGACCACGTGCGAGCGCTTGCTGCCGCAGCAGATCACGGACC GCATGATGTGCGTGGGCTACCTCAGCGGCGGCGTGGACGCCTGCCAGGGCGATTCCGGGG GCCCCCTGTCCAGCGTGGAGTCAGATGGGCGGATGTTCCTGGCCGGCGTGGTGAGCTGGG GCGACGGCTGTGCACAGAGGAACAAGCCAGGCGTGTACACGAGGCTCCCCGTGTTTCGGA ACTGGATTAAAGAGCAGACTGGGGTGTAGCTGCAAGGCCTGCCCCCCAGCCACCCCAGCG CACACACCTGCGGCCTGAGGACCGGACTGCTCACTGTACCCGCCCCGCGGGCCCCCAGAA CCCAGGCTGTGAACTGAATCCCGGAGACTTGAGATGGAGACTCGCTTGGAGACCGCTCAC CTGCCGCAGCCTCCGAAGCGGGGGAGCTAGAGATGCGGAGGGGAGGACATCCATCGGCAG TGCCCCCGACTCCGACCCCAAGCTGGGCGGAGGCGCTTTCCCGAAGGTCTGCTTCCTCTG CCCCTGATAGAGGAGCAGCTGTCACGTTGCCCCTCGCGGGGCTGGTGGGGCACCGTGGCT TACGGTCTCCGGGAAACCCAGGCCGGAAGGATCATGGAAGTCCGACGGGTCCAAGATTTG AATGTTTGACCAGCTCCCAGGGTGGGGTTCAGTGTGTGTATTTGTGTGTATGTAGTAAAA AAACACTGTATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 233-511, gnl|bosTau2|chr29 (29047285-29047007) | |
| 233-511, gnl|canFam2|chr5 (7657410-7657127) | |
| 233-511, gnl|danRer3|chr21 (12615311-12615565) | |
| 233-511, gnl|dasNov1|scaffold_255186 (1200-1482) | |
| 233-511, gnl|echTel1|scaffold_184902 (8918-9204) | |
| 233-511, gnl|fr1|chrUn (65968515-65968232) | |
| 233-511, gnl|galGal2|chr24 (1565503-1565789) | |
| 233-511, gnl|hg17|chr11 (129583513-129583799) | |
| 233-511, gnl|Hg17|chr11 (129583514-129583790) | |
| 233-511, gnl|loxAfr1|scaffold_45944 (15509-15223) | |
| 233-511, gnl|mm7|chr9 (30991178-30990892) | |
| 233-511, gnl|Mm7|chr9 (30991177-30990899) | |
| 233-511, gnl|monDom2|scaffold_15 (19173939-19174221) | |
| 233-511, gnl|oryCun1|scaffold_86853 (3975-3689) | |
| 233-511, gnl|panTro1|chr9 (131712447-131712733) | |
| 233-511, gnl|rheMac2|chr14 (128269332-128269618) | |
| 233-511, gnl|rn3|chr8 (30927199-30926913) | |
| 233-511, gnl|tetNig1|chr16 (5138427-5138146) | |
| 630-939, gnl|bosTau2|chr29 (29046489-29046184) | |
| 630-939, gnl|Hg17|chr11 (129584750-129585081) | |
| 630-939, gnl|Mm7|chr9 (30989662-30989282) | |
| 1110-1260, gnl|bosTau2|chr29 (29046027-29045879) | |
| 1110-1260, gnl|Hg17|chr11 (129585279-129585450) | |
| 1110-1260, gnl|Mm7|chr9 (30989113-30988987) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 233-511, gnl|bosTau2|chr29 (29047285-29047007) | |
| 233-511, gnl|canFam2|chr5 (7657410-7657127) | |
| 233-511, gnl|danRer3|chr21 (12615311-12615565) | |
| 233-511, gnl|dasNov1|scaffold_255186 (1200-1482) | |
| 233-511, gnl|echTel1|scaffold_184902 (8918-9204) | |
| 233-511, gnl|fr1|chrUn (65968515-65968232) | |
| 233-511, gnl|galGal2|chr24 (1565503-1565789) | |
| 233-511, gnl|hg17|chr11 (129583513-129583799) | |
| 233-511, gnl|Hg17|chr11 (129583514-129583790) | |
| 233-511, gnl|loxAfr1|scaffold_45944 (15509-15223) | |
| 233-511, gnl|mm7|chr9 (30991178-30990892) | |
| 233-511, gnl|Mm7|chr9 (30991177-30990899) | |
| 233-511, gnl|monDom2|scaffold_15 (19173939-19174221) | |
| 233-511, gnl|oryCun1|scaffold_86853 (3975-3689) | |
| 233-511, gnl|panTro1|chr9 (131712447-131712733) | |
| 233-511, gnl|rheMac2|chr14 (128269332-128269618) | |
| 233-511, gnl|rn3|chr8 (30927199-30926913) | |
| 233-511, gnl|tetNig1|chr16 (5138427-5138146) | |
| 630-939, gnl|bosTau2|chr29 (29046489-29046184) | |
| 630-939, gnl|Hg17|chr11 (129584750-129585081) | |
| 630-939, gnl|Mm7|chr9 (30989662-30989282) | |
| 1110-1260, gnl|bosTau2|chr29 (29046027-29045879) | |
| 1110-1260, gnl|Hg17|chr11 (129585279-129585450) | |
| 1110-1260, gnl|Mm7|chr9 (30989113-30988987) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cga (0.279096) | |
| ute (0.265569) | |
| jej (0.197844) | |
| col (0.195008) | |
| fty (0.17584) | |
| nco (0.161734) | |
| pla (0.133672) | |
| eep (0.122564) | |
| pgl (0.118483) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| ute (0.265569) | |
| jej (0.197844) | |
| col (0.195008) | |
| fty (0.17584) | |
| nco (0.161734) | |
| pla (0.133672) | |
| eep (0.122564) | |
| pgl (0.118483) |