Non-Coding RNA Search

Ss1.1-Mixn-0011o06.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTAGCTGGGCCTTGCCACTTTATTGACACCAAAGGTCCCAGGT
TTTGCTGGGACTTCCTGGGGGCCTGATGTCAGGCAGCCTCTGCCTTTGAGTTGGGGGTAG
GTGAGTGTATATGGAACTAGAGATGTTTTGGTTCTGGGATCTTAGCCTCAGTCCAAGGCA
TTTCGCTGCTTTTCCGAGTTACAGCTGGTCAAGCACAGGTTGTAGAAGGAGTTGGGGTCA
AAGGCTGTGCTTACCTCTTGCCAGCCCACCCACCCAGCAGCCTGTAATTCACTGGGGTTT
TTCGGAGCACCCCAGCAGTGAGGGTCCAATACCAGGACATAGGCTTCTGTGCCTGGCCCC
AGGCACACTCCCAACAAGGCCTTGGCCTGGGCATCTGCATCCCCGCCAACCATTACAGGC
CCCCCGCCTCCTGCAAAGTGAGAGTAGAGCCTCTCCAGCTCCCCCTGAAGCCCTGCTCCA
CGGGGCACGTGGCATAGGCGCCCCTGAGGCCCCCCGAAATGATCCAGGCAGAGGCTGGCC
TCTACACACCCGATCCAGCTCCGAGAGCCCCGGAAGCCGGGTGGCTTGTCTCCCATGTCC
TCCAGGGCCGCCTGCACGGCAGCCAGCCCGGGTACCCCCGTCGGCCGGCCCTCTGGCCAC
GAGCACAAAGTCTGCAGAGTGCGGTAACCGCAGCCCCAGCCCCGGTCATCCAGGCCGTCG
CAGCCGTAGTGGTAATAGAGGTAATGGCCCGAGAGGAGAGCCAGGCGAGCGGGGCCGCGG
GCGGGCGGGTCCAGGCCCAAGTGGACATCCTTCAGCGGCTCCAGGGCGGTGGGTGGGCGC
GGTGGTCGCTGGGCCGGGCAGGTGCGGTCTCCGTGCGGCGCGAAGCGAACTCCGGGCTCC
AGCGCGTCCTCTCGGCCCCGAGGCTCGAGCCAGCTGCGGGCAGACTCGGCGTGCGGGCCC
CACGTAGCAGCGGAGAGAGAGGCCGCCCCTTAACGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTAGCTGGGCCTTGCCACTTTATTGACACCAAAGGTCCCAGGT
TTTGCTGGGACTTCCTGGGGGCCTGATGTCAGGCAGCCTCTGCCTTTGAGTTGGGGGTAG
GTGAGTGTATATGGAACTAGAGATGTTTTGGTTCTGGGATCTTAGCCTCAGTCCAAGGCA
TTTCGCTGCTTTTCCGAGTTACAGCTGGTCAAGCACAGGTTGTAGAAGGAGTTGGGGTCA
AAGGCTGTGCTTACCTCTTGCCAGCCCACCCACCCAGCAGCCTGTAATTCACTGGGGTTT
TTCGGAGCACCCCAGCAGTGAGGGTCCAATACCAGGACATAGGCTTCTGTGCCTGGCCCC
AGGCACACTCCCAACAAGGCCTTGGCCTGGGCATCTGCATCCCCGCCAACCATTACAGGC
CCCCCGCCTCCTGCAAAGTGAGAGTAGAGCCTCTCCAGCTCCCCCTGAAGCCCTGCTCCA
CGGGGCACGTGGCATAGGCGCCCCTGAGGCCCCCCGAAATGATCCAGGCAGAGGCTGGCC
TCTACACACCCGATCCAGCTCCGAGAGCCCCGGAAGCCGGGTGGCTTGTCTCCCATGTCC
TCCAGGGCCGCCTGCACGGCAGCCAGCCCGGGTACCCCCGTCGGCCGGCCCTCTGGCCAC
GAGCACAAAGTCTGCAGAGTGCGGTAACCGCAGCCCCAGCCCCGGTCATCCAGGCCGTCG
CAGCCGTAGTGGTAATAGAGGTAATGGCCCGAGAGGAGAGCCAGGCGAGCGGGGCCGCGG
GCGGGCGGGTCCAGGCCCAAGTGGACATCCTTCAGCGGCTCCAGGGCGGTGGGTGGGCGC
GGTGGTCGCTGGGCCGGGCAGGTGCGGTCTCCGTGCGGCGCGAAGCGAACTCCGGGCTCC
AGCGCGTCCTCTCGGCCCCGAGGCTCGAGCCAGCTGCGGGCAGACTCGGCGTGCGGGCCC
CACGTAGCAGCGGAGAGAGAGGCCGCCCCTTAACGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BXP6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BXP6_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               54-173, - strand, RNAz p=0.704475
               

               
               294-413, - strand, RNAz p=0.581027
               

               
               494-613, - strand, RNAz p=0.938134

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-173, - strand, RNAz p=0.704475
               

               
               294-413, - strand, RNAz p=0.581027
               

               
               494-613, - strand, RNAz p=0.938134

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001015072, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001015072, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-960, gnl|bosTau2|chr25 (32923176-32922236)
               

               
               18-960, gnl|Hg17|chr7 (100130997-100131903)
               

               
               18-960, gnl|Mm7|chr5 (136213756-136212987)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-960, gnl|bosTau2|chr25 (32923176-32922236)
               

               
               18-960, gnl|Hg17|chr7 (100130997-100131903)
               

               
               18-960, gnl|Mm7|chr5 (136213756-136212987)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               pty (0.142714)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               pty (0.142714)

	54-173, - strand, RNAz p=0.704475
	294-413, - strand, RNAz p=0.581027
	494-613, - strand, RNAz p=0.938134

	18-960, gnl\|bosTau2\|chr25 (32923176-32922236)
	18-960, gnl\|Hg17\|chr7 (100130997-100131903)
	18-960, gnl\|Mm7\|chr5 (136213756-136212987)