Non-Coding RNA Search

Ss1.1-Mixn-0011o11.5

Sequence:


               
               TCCACTTCATCTTGTTTGTCACATTCAGCCAGAAAAAAAGCAAGACTTCAGTGAAGGTAA
GATAAATAAATACAAATATATATACATATATATTTTTAGTAGATAAGAGCTAATGACATA
TATGTAATGCTTTATTGAATTTTTGAAGTATTGGGCCATTAAAATTTTCCTTTTGGAAAT
CCAGCTAAATCCAGATGAATTTTTAATGCTAATACGATTAAAAACTAATGGGAAGAAATG
GAATAATTTTTTCATCAACATGTAGAGCTGCTATTTTACTACTTGGAGAATGTGAAGTGA
AAATTGGACCCCAGAGGGTTTCCTTGCATTTTCATCGGTTCTCTGTTAGAGAAAACTAAA
ATCATCCAGTGTCGCTGGAGAAAAATTATTGTAAAATACTTCATCATCAAGAACCTTGAG
TTCAAAACATTGTGACCTTATGGAGGGAGGGGTGAAGGTATTGAGAGTGATATTTTTTCC
ATCTGGGCTCTGGTTCAGGTGACACGCACAACAGAAAATAGAAGCTTTCAGGGCATGTAT
TGCTTTAAATGCATAATACAGTTTGCTGCCAGACCAGATGTGTTGGAAAACAAAAACAAA
ACCACCTCCTTTCTTATAGCCATTGAAACAAAGTTTACGTTGTGTTTTAACAAGTTTGTA
TTTTAGTTTGCATTGCCACACATCTGCTTATTTAAAAAATGACGTCCCTTTGGTAGTAAT
GGTTCAGCACAAGTAGGTGTCACAGCTTGATGTTTGTGTGTTTTAATTCTCAGTGTTCTT
TGATTCCAGGTCTTATAGAGCAGTTAAGGCAACTGTAATGGCATTTTTTGAAATATATTG
TAAAATAATAAAAGGTAACATAATTAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCACTTCATCTTGTTTGTCACATTCAGCCAGAAAAAAAGCAAGACTTCAGTGAAGGTAA
GATAAATAAATACAAATATATATACATATATATTTTTAGTAGATAAGAGCTAATGACATA
TATGTAATGCTTTATTGAATTTTTGAAGTATTGGGCCATTAAAATTTTCCTTTTGGAAAT
CCAGCTAAATCCAGATGAATTTTTAATGCTAATACGATTAAAAACTAATGGGAAGAAATG
GAATAATTTTTTCATCAACATGTAGAGCTGCTATTTTACTACTTGGAGAATGTGAAGTGA
AAATTGGACCCCAGAGGGTTTCCTTGCATTTTCATCGGTTCTCTGTTAGAGAAAACTAAA
ATCATCCAGTGTCGCTGGAGAAAAATTATTGTAAAATACTTCATCATCAAGAACCTTGAG
TTCAAAACATTGTGACCTTATGGAGGGAGGGGTGAAGGTATTGAGAGTGATATTTTTTCC
ATCTGGGCTCTGGTTCAGGTGACACGCACAACAGAAAATAGAAGCTTTCAGGGCATGTAT
TGCTTTAAATGCATAATACAGTTTGCTGCCAGACCAGATGTGTTGGAAAACAAAAACAAA
ACCACCTCCTTTCTTATAGCCATTGAAACAAAGTTTACGTTGTGTTTTAACAAGTTTGTA
TTTTAGTTTGCATTGCCACACATCTGCTTATTTAAAAAATGACGTCCCTTTGGTAGTAAT
GGTTCAGCACAAGTAGGTGTCACAGCTTGATGTTTGTGTGTTTTAATTCTCAGTGTTCTT
TGATTCCAGGTCTTATAGAGCAGTTAAGGCAACTGTAATGGCATTTTTTGAAATATATTG
TAAAATAATAAAAGGTAACATAATTAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               33-869, gnl|bosTau2|chr18 (162926-163773)
               

               
               33-869, gnl|Hg17|chr8 (66678050-66677261)
               

               
               33-869, gnl|Mm7|chr3 (18864949-18864166)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-869, gnl|bosTau2|chr18 (162926-163773)
               

               
               33-869, gnl|Hg17|chr8 (66678050-66677261)
               

               
               33-869, gnl|Mm7|chr3 (18864949-18864166)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               cte (0.58548)
               

               
               mgp (0.461361)
               

               
               gul (0.355177)
               

               
               spc (0.340097)
               

               
               col (0.195008)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               tra (0.123092)
               

               
               med (0.116252)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               mgp (0.461361)
               

               
               gul (0.355177)
               

               
               spc (0.340097)
               

               
               col (0.195008)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               tra (0.123092)
               

               
               med (0.116252)

	33-869, gnl\|bosTau2\|chr18 (162926-163773)
	33-869, gnl\|Hg17\|chr8 (66678050-66677261)
	33-869, gnl\|Mm7\|chr3 (18864949-18864166)

	cte (0.58548)
	mgp (0.461361)
	gul (0.355177)
	spc (0.340097)
	col (0.195008)
	mga (0.160205)
	fco (0.157208)
	csk (0.140746)
	nca (0.136874)
	ssp (0.13552)
	tra (0.123092)
	med (0.116252)