Non-Coding RNA Search

Ss1.1-Mixn-0011p05.5

Sequence:


               
               CCCAGAAAAATCCATTTTTATGTTTTTAGAACATAAACTGAATTTAAGGTAAACTACAAC
TTCTCTGTAGTGTGTTCAAGATACATTTTTGAAATTTAAAATTAAAAGACAAATTCTGTC
ATACTTGGTTTAAGTGAAAATATCTTTTTAAAAGAACAGATATAAATCTCTAGCCTTTTA
TTCCGAATGGATACACTCTATCCTGTGCTTTTGAAGTTCATAAATTTTAACCTATTAAGA
CAATAATCATTAACATTTCCAGCAAAACCTCTAATAGCAGGAAAATGGAGTTCAAAAAGT
CCAAGCGAAGAAAAATTCAGGGTTTCTTAATTTCACATAATTTTTTTTCAACTGGTCCAT
ACTCTAATGATAGTGCACCTGATACTCTAACTAGAGTGACATATATCCTGAGTTTGCTCA
TAATAGACCTGGTTATTCCTATTTTCTCAGCTTATACAGTGCCTCCTTTCTAGTAAGTGT
CCTAATTTGGAGGAGATATTATATGATTGCCCTGTATATAACCACACTGTACTGAGAAGT
GACTGTCTAAACCCACTACCCTTTGAGAGAAGGAACTGCAGTATTAGAGCAGGAGCTAAT
TACTCTTGTCCCAGCCTTGCCTAGACACCATTTGTTTGATGTGTAGAACATGCATAGTAC
GTATCTTTTCTTTTAATAGAAGTTGTATTGGAATGATTCCACTTATGGTAAATAGTAAAC
AGTGAGCTTTTATATATTTGAACTGCTATTAATTGTTCTTTTAATTGTTTCAAATAGTCC
TGAAATACTGGTATATTATTTTTTAAAACCTCCTTCTTGGTAAAATTCAACTCTTAGATG
ATAATGTGCCATTTATTATTGAATGTCCTTGCCCATATATAAAACATGCTAATATGTGTT
TTACTTGTTAATAAAGTTCGATAAATGTGGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGAAAAATCCATTTTTATGTTTTTAGAACATAAACTGAATTTAAGGTAAACTACAAC
TTCTCTGTAGTGTGTTCAAGATACATTTTTGAAATTTAAAATTAAAAGACAAATTCTGTC
ATACTTGGTTTAAGTGAAAATATCTTTTTAAAAGAACAGATATAAATCTCTAGCCTTTTA
TTCCGAATGGATACACTCTATCCTGTGCTTTTGAAGTTCATAAATTTTAACCTATTAAGA
CAATAATCATTAACATTTCCAGCAAAACCTCTAATAGCAGGAAAATGGAGTTCAAAAAGT
CCAAGCGAAGAAAAATTCAGGGTTTCTTAATTTCACATAATTTTTTTTCAACTGGTCCAT
ACTCTAATGATAGTGCACCTGATACTCTAACTAGAGTGACATATATCCTGAGTTTGCTCA
TAATAGACCTGGTTATTCCTATTTTCTCAGCTTATACAGTGCCTCCTTTCTAGTAAGTGT
CCTAATTTGGAGGAGATATTATATGATTGCCCTGTATATAACCACACTGTACTGAGAAGT
GACTGTCTAAACCCACTACCCTTTGAGAGAAGGAACTGCAGTATTAGAGCAGGAGCTAAT
TACTCTTGTCCCAGCCTTGCCTAGACACCATTTGTTTGATGTGTAGAACATGCATAGTAC
GTATCTTTTCTTTTAATAGAAGTTGTATTGGAATGATTCCACTTATGGTAAATAGTAAAC
AGTGAGCTTTTATATATTTGAACTGCTATTAATTGTTCTTTTAATTGTTTCAAATAGTCC
TGAAATACTGGTATATTATTTTTTAAAACCTCCTTCTTGGTAAAATTCAACTCTTAGATG
ATAATGTGCCATTTATTATTGAATGTCCTTGCCCATATATAAAACATGCTAATATGTGTT
TTACTTGTTAATAAAGTTCGATAAATGTGGAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               2-932, gnl|bosTau2|chr12 (30943252-30942293)
               

               
               2-932, gnl|Hg17|chr13 (79027025-79027982)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-932, gnl|bosTau2|chr12 (30943252-30942293)
               

               
               2-932, gnl|Hg17|chr13 (79027025-79027982)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               fco (1.41487)
               

               
               ski (0.440205)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.41487)
               

               
               ski (0.440205)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)

	2-932, gnl\|bosTau2\|chr12 (30943252-30942293)
	2-932, gnl\|Hg17\|chr13 (79027025-79027982)

	fco (1.41487)
	ski (0.440205)
	ecc (0.23007)
	spc (0.226732)
	fcc (0.197785)
	mgm (0.180343)
	rec (0.17307)
	eye (0.170503)
	fhi (0.169578)
	lin (0.145603)