Non-Coding RNA Search

Ss1.1-Mixn-0011p07.5

Sequence:


               
               TTTTTTTTTTTTTTAAGTTTTGCCTGACTTTATCTTTTGTATTTTATTTAGTCTCATGGA
TCTTTTCAAAGAACCAATTGTTAGCATTGTTTATCTTTTCTGTTCTTTATTTGAGCCTAT
TGATTTGGTTCCTAAGACTTTCTTCCTTTTCTACTTAGGATTTACTTTTTTTTTATAAAG
GGGTTGGCAGGACTCTGACTTTATTGAACTATATACAACTTATTTTTGGAACATTTAAGT
ATCACTAGTCTTTCTTGCAACATTTTAAAGTTTATATTTGACTTATTTATGAATTATCAA
TACATTATCTTTCTGAATGCCATTGATGATTTTAACATAAAACAATCTTTTAAAAAGCAT
AGTATGTCCATATGCATTTTATCAGAAATCCCTAAATCAAAGAAATGTAACCCATTTAGG
CACGCGGAATAAAAGATGCTACAGAAATCATCTTTGAGATGTCAAAAGACGAAAGAAAAG
ATTTCTACAGGACTATAGCATGGGGTCTGAACCGGCCTTTGTTTGCAGTTTATAGAAGAG
TGCTTCGCATGTATGATGACAGAAACCATGTGGGAAAATATACACCAGAAGAAATTGAAA
AGCTCAAGGAGAAAAAGGCAATTGCTGCCTGTTTTTTTTCACCCACAGACAACTGTGGAC
CCCCCAAAAAGGCCACACTTTCAAACTTTGGCTCTCAAAGTATTGCTGCCCACAACTTCC
AAACCAGTCAAATGGGAAGAAGAAGAATGAAGAATAAATGATGAAATTAAAAGGGAGAAA
ACAGTTGAACCAAATGCTGATTGGCAGACTCTTGTTTTAGGCTCCGGATAAAGCATGGCA
ATGACTGGGCAACAATAGGGGCGGTGCTAGGAAGGAGTGCATCTTCCGTCAAGGATCGGT
GCCGACTGATGAAGGACACTTGCAACACAGGAAAGTGGACAGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTAAGTTTTGCCTGACTTTATCTTTTGTATTTTATTTAGTCTCATGGA
TCTTTTCAAAGAACCAATTGTTAGCATTGTTTATCTTTTCTGTTCTTTATTTGAGCCTAT
TGATTTGGTTCCTAAGACTTTCTTCCTTTTCTACTTAGGATTTACTTTTTTTTTATAAAG
GGGTTGGCAGGACTCTGACTTTATTGAACTATATACAACTTATTTTTGGAACATTTAAGT
ATCACTAGTCTTTCTTGCAACATTTTAAAGTTTATATTTGACTTATTTATGAATTATCAA
TACATTATCTTTCTGAATGCCATTGATGATTTTAACATAAAACAATCTTTTAAAAAGCAT
AGTATGTCCATATGCATTTTATCAGAAATCCCTAAATCAAAGAAATGTAACCCATTTAGG
CACGCGGAATAAAAGATGCTACAGAAATCATCTTTGAGATGTCAAAAGACGAAAGAAAAG
ATTTCTACAGGACTATAGCATGGGGTCTGAACCGGCCTTTGTTTGCAGTTTATAGAAGAG
TGCTTCGCATGTATGATGACAGAAACCATGTGGGAAAATATACACCAGAAGAAATTGAAA
AGCTCAAGGAGAAAAAGGCAATTGCTGCCTGTTTTTTTTCACCCACAGACAACTGTGGAC
CCCCCAAAAAGGCCACACTTTCAAACTTTGGCTCTCAAAGTATTGCTGCCCACAACTTCC
AAACCAGTCAAATGGGAAGAAGAAGAATGAAGAATAAATGATGAAATTAAAAGGGAGAAA
ACAGTTGAACCAAATGCTGATTGGCAGACTCTTGTTTTAGGCTCCGGATAAAGCATGGCA
ATGACTGGGCAACAATAGGGGCGGTGCTAGGAAGGAGTGCATCTTCCGTCAAGGATCGGT
GCCGACTGATGAAGGACACTTGCAACACAGGAAAGTGGACAGAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               611-722, - strand, RNAz p=0.967446

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               611-722, - strand, RNAz p=0.967446

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               640-722, BP348660 Sugano cDNA library, brain Homo sapiens cDNA clone 
(dbj|BP348660.1|), blast E-value=2e-33, identity=97.59% 
               

               
               640-722, BP348681 Sugano cDNA library, brain Homo sapiens cDNA clone 
(dbj|BP348681.1|), blast E-value=2e-33, identity=97.59% 
               

               
               640-722, DA940829 SPLEN2 Homo sapiens cDNA clone SPLEN2014864 5', mRNA 
(dbj|DA940829.1|), blast E-value=2e-33, identity=97.59% 
               

               
               640-722, DB137203 THYMU3 Homo sapiens cDNA clone THYMU3008898 5', mRNA 
(dbj|DB137203.1|), blast E-value=2e-33, identity=97.59% 
               

               
               649-722, DB306792 BRCAN2 Homo sapiens cDNA clone BRCAN2017533 3', mRNA 
(dbj|DB306792.1|), blast E-value=5e-28, identity=97.3% 
               

               
               649-722, AGENCOURT_8232466 Lupski_sympathetic_trunk Homo sapiens cDNA clone 
(gb|BQ716241.1|), blast E-value=5e-28, identity=97.3%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               640-722, BP348660 Sugano cDNA library, brain Homo sapiens cDNA clone 
(dbj|BP348660.1|), blast E-value=2e-33, identity=97.59% 
               

               
               640-722, BP348681 Sugano cDNA library, brain Homo sapiens cDNA clone 
(dbj|BP348681.1|), blast E-value=2e-33, identity=97.59% 
               

               
               640-722, DA940829 SPLEN2 Homo sapiens cDNA clone SPLEN2014864 5', mRNA 
(dbj|DA940829.1|), blast E-value=2e-33, identity=97.59% 
               

               
               640-722, DB137203 THYMU3 Homo sapiens cDNA clone THYMU3008898 5', mRNA 
(dbj|DB137203.1|), blast E-value=2e-33, identity=97.59% 
               

               
               649-722, DB306792 BRCAN2 Homo sapiens cDNA clone BRCAN2017533 3', mRNA 
(dbj|DB306792.1|), blast E-value=5e-28, identity=97.3% 
               

               
               649-722, AGENCOURT_8232466 Lupski_sympathetic_trunk Homo sapiens cDNA clone 
(gb|BQ716241.1|), blast E-value=5e-28, identity=97.3%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-581, gnl|bosTau2|chr4 (12961531-12962075)
               

               
               7-581, gnl|Hg17|chr7 (86453052-86453673)
               

               
               7-581, gnl|Mm7|chr5 (9170726-9170096)
               


               
               611-931, gnl|bosTau2|chr4 (12963926-12964245)
               

               
               611-931, gnl|Hg17|chr7 (86455984-86456305)
               

               
               611-931, gnl|Mm7|chr5 (9168337-9168011)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-581, gnl|bosTau2|chr4 (12961531-12962075)
               

               
               7-581, gnl|Hg17|chr7 (86453052-86453673)
               

               
               7-581, gnl|Mm7|chr5 (9170726-9170096)
               


               
               611-931, gnl|bosTau2|chr4 (12963926-12964245)
               

               
               611-931, gnl|Hg17|chr7 (86455984-86456305)
               

               
               611-931, gnl|Mm7|chr5 (9168337-9168011)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.142714)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	640-722, BP348660 Sugano cDNA library, brain Homo sapiens cDNA clone (dbj\|BP348660.1\|), blast E-value=2e-33, identity=97.59%
	640-722, BP348681 Sugano cDNA library, brain Homo sapiens cDNA clone (dbj\|BP348681.1\|), blast E-value=2e-33, identity=97.59%
	640-722, DA940829 SPLEN2 Homo sapiens cDNA clone SPLEN2014864 5', mRNA (dbj\|DA940829.1\|), blast E-value=2e-33, identity=97.59%
	640-722, DB137203 THYMU3 Homo sapiens cDNA clone THYMU3008898 5', mRNA (dbj\|DB137203.1\|), blast E-value=2e-33, identity=97.59%
	649-722, DB306792 BRCAN2 Homo sapiens cDNA clone BRCAN2017533 3', mRNA (dbj\|DB306792.1\|), blast E-value=5e-28, identity=97.3%
	649-722, AGENCOURT_8232466 Lupski_sympathetic_trunk Homo sapiens cDNA clone (gb\|BQ716241.1\|), blast E-value=5e-28, identity=97.3%

	7-581, gnl\|bosTau2\|chr4 (12961531-12962075)
	7-581, gnl\|Hg17\|chr7 (86453052-86453673)
	7-581, gnl\|Mm7\|chr5 (9170726-9170096)

	611-931, gnl\|bosTau2\|chr4 (12963926-12964245)
	611-931, gnl\|Hg17\|chr7 (86455984-86456305)
	611-931, gnl\|Mm7\|chr5 (9168337-9168011)