Non-Coding RNA Search

Ss1.1-Mixn-0012a09.5

Sequence:


               
               AGCTACCGCTCAGCTGTATGACCTCTGGGCAGATGGTTTAACCTCTCCAGAAGACAGGTT
CCTCGTCTCTACAGTGAGCATCATTGAATCCTCAAAGGGTTGTTAGGATCAAGTACACGC
GGAACATTTACTACTTGCTCAGGGAATGCTTGGTTCCCCCCCCTCTGCCCCGAGCCCCCA
TCCCAGCTGCTCCTGTGCCACCTTCTGTTCCGTGGGCGTCCTCTCTGCCATCTGTCATAT
TCAACCACCTTTGTGCTTCTTGAGCTCATTTCTGGCAGCCAGTAACCCCTTCTTCCCTCT
AGTCACCCCCACAGGTCATCCAAGTCAGGACTGCCCATCCCTTCCGATGGCTTTCTTGCA
GTCCCCACCTTTACCCCCCACTTCATCTCCTGCTTGAAGGAAGGGGGAAGCGGGAAGAGA
GGGACTGGGATGCGGCGATGGCCGAGGAGTCTGGGAAGTGGGGAGAGCCTCTGAGACTGT
GTGGCCAGGGGGAGATGGGTGTCTGCATGTGGGTGTGTCCCCTCCTGTACCACCCGGCCC
TCCCGTCACCCTCTCTACCCCACCCTCCCAGCCTGCAATGTGACTATCCACAACCGCTGT
AAAGACACCCTCGCCAACTGTACCAAGGTCAAGCAGAAGCAACAGAAAGCCGCCCTGCTG
AAGAACAACACTGCCTTGCAGTCTGTTTCCCTTCGCAGTAAGACCACCACCCGGGAGCGG
CCCAGCTCTGCTATCTACCCCTCCGACAGCTTCCGGCAGTCCCTGCTTGGCTCCCGCCGC
GGCCGCTCCTCCTTGTCTTTAGCCAAGAGCGTTTCCACCACCAACATTGCTGGACACTTC
AACGATGAGTCTCCCCTGGGGCTGCGCCGGATCCTCTTCTCCCAAGGGGGCCAGCCACCC
AGCTCCTGCCCCGGGCCTATGGGGGTGACCCTTGGGTGACGGCTATTCGAGGTGATCTAC
AATGAGCTGATGAGTGACTTTGAAATGGGCGAGAAGGACTTTGCAGCAGATTCCTGGAGC
CTTGCTGTGGATAGCAGCTTCTTGCAGCAACATAAAAAGGAGGTGATGAAGCAACAGGAT
GTCATCTATGAGCTAATCCAGACAGAGCTTCATCACGTGCGGACGCTAAAGATCATGACC
CGCCTCTTCCGCACGGGGATGCTGGAAGAGCTGCAACTGGAGCCAGGAGTGGTCCAGGGC
CTATTCCCCTGCGTGGACGAGCTTAGTGACATCCACACACGCTTCCTCAGCCAGTTTTTT
TGCCAATTTGATTGATTGTAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTACCGCTCAGCTGTATGACCTCTGGGCAGATGGTTTAACCTCTCCAGAAGACAGGTT
CCTCGTCTCTACAGTGAGCATCATTGAATCCTCAAAGGGTTGTTAGGATCAAGTACACGC
GGAACATTTACTACTTGCTCAGGGAATGCTTGGTTCCCCCCCCTCTGCCCCGAGCCCCCA
TCCCAGCTGCTCCTGTGCCACCTTCTGTTCCGTGGGCGTCCTCTCTGCCATCTGTCATAT
TCAACCACCTTTGTGCTTCTTGAGCTCATTTCTGGCAGCCAGTAACCCCTTCTTCCCTCT
AGTCACCCCCACAGGTCATCCAAGTCAGGACTGCCCATCCCTTCCGATGGCTTTCTTGCA
GTCCCCACCTTTACCCCCCACTTCATCTCCTGCTTGAAGGAAGGGGGAAGCGGGAAGAGA
GGGACTGGGATGCGGCGATGGCCGAGGAGTCTGGGAAGTGGGGAGAGCCTCTGAGACTGT
GTGGCCAGGGGGAGATGGGTGTCTGCATGTGGGTGTGTCCCCTCCTGTACCACCCGGCCC
TCCCGTCACCCTCTCTACCCCACCCTCCCAGCCTGCAATGTGACTATCCACAACCGCTGT
AAAGACACCCTCGCCAACTGTACCAAGGTCAAGCAGAAGCAACAGAAAGCCGCCCTGCTG
AAGAACAACACTGCCTTGCAGTCTGTTTCCCTTCGCAGTAAGACCACCACCCGGGAGCGG
CCCAGCTCTGCTATCTACCCCTCCGACAGCTTCCGGCAGTCCCTGCTTGGCTCCCGCCGC
GGCCGCTCCTCCTTGTCTTTAGCCAAGAGCGTTTCCACCACCAACATTGCTGGACACTTC
AACGATGAGTCTCCCCTGGGGCTGCGCCGGATCCTCTTCTCCCAAGGGGGCCAGCCACCC
AGCTCCTGCCCCGGGCCTATGGGGGTGACCCTTGGGTGACGGCTATTCGAGGTGATCTAC
AATGAGCTGATGAGTGACTTTGAAATGGGCGAGAAGGACTTTGCAGCAGATTCCTGGAGC
CTTGCTGTGGATAGCAGCTTCTTGCAGCAACATAAAAAGGAGGTGATGAAGCAACAGGAT
GTCATCTATGAGCTAATCCAGACAGAGCTTCATCACGTGCGGACGCTAAAGATCATGACC
CGCCTCTTCCGCACGGGGATGCTGGAAGAGCTGCAACTGGAGCCAGGAGTGGTCCAGGGC
CTATTCCCCTGCGTGGACGAGCTTAGTGACATCCACACACGCTTCCTCAGCCAGTTTTTT
TGCCAATTTGATTGATTGTAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9W736_XENLA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9W736_XENLA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               52-478, - strand, RNAz p=0.998146

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-478, - strand, RNAz p=0.998146

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               17-639, gnl|bosTau2|chr3 (10646017-10646621)
               

               
               17-639, gnl|Hg17|chr1 (152750318-152749684)
               


               
               948-1090, gnl|bosTau2|chr3 (10648271-10648413)
               

               
               948-1090, gnl|canFam2|chr7 (44810190-44810033)
               

               
               948-1090, gnl|danRer3|chr16 (2548769-2548621)
               

               
               948-1090, gnl|dasNov1|scaffold_13238 (17647-17804)
               

               
               948-1090, gnl|echTel1|scaffold_301723 (34123-34277)
               

               
               948-1090, gnl|fr1|chrUn (71170043-71169888)
               

               
               948-1090, gnl|hg17|chr1 (152747839-152747996)
               

               
               948-1090, gnl|Hg17|chr1 (152747994-152747852)
               

               
               948-1090, gnl|loxAfr1|scaffold_24471 (10513-10677)
               

               
               948-1090, gnl|mm7|chr3 (88747462-88747305)
               

               
               948-1090, gnl|Mm7|chr3 (88747305-88747447)
               

               
               948-1090, gnl|monDom2|scaffold_59 (1577711-1577547)
               

               
               948-1090, gnl|oryCun1|scaffold_185133 (3460-3303)
               

               
               948-1090, gnl|panTro1|chr1 (134688433-134688590)
               

               
               948-1090, gnl|rheMac2|chr1 (134544926-134545083)
               

               
               948-1090, gnl|rn3|chr2 (180710824-180710667)
               

               
               948-1090, gnl|tetNig1|chrUn_random (46841230-46841089)
               

               
               948-1090, gnl|xenTro1|scaffold_1553 (130013-129861)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-639, gnl|bosTau2|chr3 (10646017-10646621)
               

               
               17-639, gnl|Hg17|chr1 (152750318-152749684)
               


               
               948-1090, gnl|bosTau2|chr3 (10648271-10648413)
               

               
               948-1090, gnl|canFam2|chr7 (44810190-44810033)
               

               
               948-1090, gnl|danRer3|chr16 (2548769-2548621)
               

               
               948-1090, gnl|dasNov1|scaffold_13238 (17647-17804)
               

               
               948-1090, gnl|echTel1|scaffold_301723 (34123-34277)
               

               
               948-1090, gnl|fr1|chrUn (71170043-71169888)
               

               
               948-1090, gnl|hg17|chr1 (152747839-152747996)
               

               
               948-1090, gnl|Hg17|chr1 (152747994-152747852)
               

               
               948-1090, gnl|loxAfr1|scaffold_24471 (10513-10677)
               

               
               948-1090, gnl|mm7|chr3 (88747462-88747305)
               

               
               948-1090, gnl|Mm7|chr3 (88747305-88747447)
               

               
               948-1090, gnl|monDom2|scaffold_59 (1577711-1577547)
               

               
               948-1090, gnl|oryCun1|scaffold_185133 (3460-3303)
               

               
               948-1090, gnl|panTro1|chr1 (134688433-134688590)
               

               
               948-1090, gnl|rheMac2|chr1 (134544926-134545083)
               

               
               948-1090, gnl|rn3|chr2 (180710824-180710667)
               

               
               948-1090, gnl|tetNig1|chrUn_random (46841230-46841089)
               

               
               948-1090, gnl|xenTro1|scaffold_1553 (130013-129861)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               med (0.116252)

	17-639, gnl\|bosTau2\|chr3 (10646017-10646621)
	17-639, gnl\|Hg17\|chr1 (152750318-152749684)

	948-1090, gnl\|bosTau2\|chr3 (10648271-10648413)
	948-1090, gnl\|canFam2\|chr7 (44810190-44810033)
	948-1090, gnl\|danRer3\|chr16 (2548769-2548621)
	948-1090, gnl\|dasNov1\|scaffold_13238 (17647-17804)
	948-1090, gnl\|echTel1\|scaffold_301723 (34123-34277)
	948-1090, gnl\|fr1\|chrUn (71170043-71169888)
	948-1090, gnl\|hg17\|chr1 (152747839-152747996)
	948-1090, gnl\|Hg17\|chr1 (152747994-152747852)
	948-1090, gnl\|loxAfr1\|scaffold_24471 (10513-10677)
	948-1090, gnl\|mm7\|chr3 (88747462-88747305)
	948-1090, gnl\|Mm7\|chr3 (88747305-88747447)
	948-1090, gnl\|monDom2\|scaffold_59 (1577711-1577547)
	948-1090, gnl\|oryCun1\|scaffold_185133 (3460-3303)
	948-1090, gnl\|panTro1\|chr1 (134688433-134688590)
	948-1090, gnl\|rheMac2\|chr1 (134544926-134545083)
	948-1090, gnl\|rn3\|chr2 (180710824-180710667)
	948-1090, gnl\|tetNig1\|chrUn_random (46841230-46841089)
	948-1090, gnl\|xenTro1\|scaffold_1553 (130013-129861)