Non-Coding RNA Search

Ss1.1-Mixn-0012b07.5

Sequence:


               
               GTAAAACTCAACATTTGAGATCCCTGCAGCTTTTAGCTTGTGAATGAGAAAAATTCAATA
TATCAATAAAAGTTTAAATTATCACGATTAATTTAATTTTCAAAATAAAGGGGGAAAATT
ACAATTCCTTGTTAGGACATAGGGGAAAGGCATGGCTTGTCATATCATGCAAAATGCTTC
ATGACACAGAGATCGATGGCACAATAGCTATTGTCCCATCAGTGTTTGTTTAAATTTTAG
AAGATCTCTATCAATTACTGGTGCATAACTTAGGGTTGCTCTGCCTTTGGCTAATGTAGT
TAGAGCCTGCCCAACACTGAAGGCTGCTCCCCGCAAAATAGCCACGTTGCCTCTGGCTGG
GTGACGTGGGGTGTGCCGAGTGCTCACAAGCCAGAGGCCAGCTGCTGTTGCACAGCATTT
GAGCCTTTTCCTTTCCACACCCAAGGGCTCCTTCTGTTACTGTAGCTTATTCGTGGCTCA
GAAATAGTTGCTGTGATAAAAATATTTCATCTGTTAGAAAAAAAGGGTAGCTCCACCCTC
TTTTCGAAAGGACCATGAGCCACTGAAAAACTCTAAGAAGTGGTTTCATTTACATGTCGG
GGGTGGGGGGGAGTTCTTGATCATGTTCACATTGTTTTAAGATAAAGTGATGTTTTTCCT
GCTTTTAGGGTTAAAATCAAAGAGATTTTATATTTTTATCGTTAGAGATCATAGTTACAA
TGTAGTAAGTTATGCTGAATCAATGTATAGTGAAACCCAAAGCAATATGTTAGTAAAAAA
GCAATACTTTTCTAACGCTGTGATATGGGTAATACAGAGTTGCTACTCAGAATCTGATAA
AGCTCTTACTTCCTATCGTGAATTAGGGAACACTACTTTTTATAAAGCCATATTTTTTTA
GGGAAGCTTAGGAGTGACATGGATCTAATGAGTGAATGAGTGAAATGTTGCTGGATTTTT
GTATAGAATCATCTCTAAAACTGTGGACACTGAGGATTCATTTTGCTGTGGTCAACTTCA
AATACTTTCTAATTCCAAATACCTGAATTCATGAGCCTTGTCTTTACAAATGTCTGCCAA
GCTGGGCAACACCAATGGATTTCTAAAAAGAATGGAAGTGTCTTCTGTTTAATGTTATTT
GAGTGCAATAAAATGCAGAATTCTTCTCTATATTGTCATTGTTTTGAAGTCTTTCTGGTT
TTGTATGTAACGGTTCATTTATACTCTGGTATTTTAGAATATTATAGCATTTTTGTTGAC
TAAAGTCACAAAGCAGTGTGAATGTCTTAACCTATTTGTAGTAAGTAATTCCTAGTAGTA
CTGATTTCTCGTGGTGGTAATTTCTAGTAGGTAATGTTTGTTTATGTTGTGTAACATTTA
CTATCATGCTCCATTTTCTGGGGCAGGATTAAAATGAAATAGCTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAAACTCAACATTTGAGATCCCTGCAGCTTTTAGCTTGTGAATGAGAAAAATTCAATA
TATCAATAAAAGTTTAAATTATCACGATTAATTTAATTTTCAAAATAAAGGGGGAAAATT
ACAATTCCTTGTTAGGACATAGGGGAAAGGCATGGCTTGTCATATCATGCAAAATGCTTC
ATGACACAGAGATCGATGGCACAATAGCTATTGTCCCATCAGTGTTTGTTTAAATTTTAG
AAGATCTCTATCAATTACTGGTGCATAACTTAGGGTTGCTCTGCCTTTGGCTAATGTAGT
TAGAGCCTGCCCAACACTGAAGGCTGCTCCCCGCAAAATAGCCACGTTGCCTCTGGCTGG
GTGACGTGGGGTGTGCCGAGTGCTCACAAGCCAGAGGCCAGCTGCTGTTGCACAGCATTT
GAGCCTTTTCCTTTCCACACCCAAGGGCTCCTTCTGTTACTGTAGCTTATTCGTGGCTCA
GAAATAGTTGCTGTGATAAAAATATTTCATCTGTTAGAAAAAAAGGGTAGCTCCACCCTC
TTTTCGAAAGGACCATGAGCCACTGAAAAACTCTAAGAAGTGGTTTCATTTACATGTCGG
GGGTGGGGGGGAGTTCTTGATCATGTTCACATTGTTTTAAGATAAAGTGATGTTTTTCCT
GCTTTTAGGGTTAAAATCAAAGAGATTTTATATTTTTATCGTTAGAGATCATAGTTACAA
TGTAGTAAGTTATGCTGAATCAATGTATAGTGAAACCCAAAGCAATATGTTAGTAAAAAA
GCAATACTTTTCTAACGCTGTGATATGGGTAATACAGAGTTGCTACTCAGAATCTGATAA
AGCTCTTACTTCCTATCGTGAATTAGGGAACACTACTTTTTATAAAGCCATATTTTTTTA
GGGAAGCTTAGGAGTGACATGGATCTAATGAGTGAATGAGTGAAATGTTGCTGGATTTTT
GTATAGAATCATCTCTAAAACTGTGGACACTGAGGATTCATTTTGCTGTGGTCAACTTCA
AATACTTTCTAATTCCAAATACCTGAATTCATGAGCCTTGTCTTTACAAATGTCTGCCAA
GCTGGGCAACACCAATGGATTTCTAAAAAGAATGGAAGTGTCTTCTGTTTAATGTTATTT
GAGTGCAATAAAATGCAGAATTCTTCTCTATATTGTCATTGTTTTGAAGTCTTTCTGGTT
TTGTATGTAACGGTTCATTTATACTCTGGTATTTTAGAATATTATAGCATTTTTGTTGAC
TAAAGTCACAAAGCAGTGTGAATGTCTTAACCTATTTGTAGTAAGTAATTCCTAGTAGTA
CTGATTTCTCGTGGTGGTAATTTCTAGTAGGTAATGTTTGTTTATGTTGTGTAACATTTA
CTATCATGCTCCATTTTCTGGGGCAGGATTAAAATGAAATAGCTCCTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1332, gnl|bosTau2|chr14 (15485067-15486409)
               

               
               1-1332, gnl|Hg17|chr8 (62700807-62699479)
               

               
               1-1332, gnl|Mm7|chr4 (9503549-9502285)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1332, gnl|bosTau2|chr14 (15485067-15486409)
               

               
               1-1332, gnl|Hg17|chr8 (62700807-62699479)
               

               
               1-1332, gnl|Mm7|chr4 (9503549-9502285)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               lyg (1.06482)
               

               
               fat (1.03199)
               

               
               pro (1.02407)
               

               
               tra (0.61546)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               ova (0.387397)
               

               
               ret (0.3862)
               

               
               pgl (0.35545)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (1.06482)
               

               
               fat (1.03199)
               

               
               pro (1.02407)
               

               
               tra (0.61546)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               ova (0.387397)
               

               
               ret (0.3862)
               

               
               pgl (0.35545)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1-1332, gnl\|bosTau2\|chr14 (15485067-15486409)
	1-1332, gnl\|Hg17\|chr8 (62700807-62699479)
	1-1332, gnl\|Mm7\|chr4 (9503549-9502285)

	lyg (1.06482)
	fat (1.03199)
	pro (1.02407)
	tra (0.61546)
	mgp (0.461361)
	ski (0.440205)
	ova (0.387397)
	ret (0.3862)
	pgl (0.35545)
	nca (0.273748)
	fce (0.271592)
	bla (0.248694)
	hea (0.204499)
	aor (0.195274)
	nlu (0.191681)
	cmu (0.186393)
	gul (0.177588)
	rec (0.17307)
	mga (0.160205)
	liv (0.146284)
	spl (0.143184)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	eru (0.120048)
	med (0.116252)
	jca (0.11396)