Non-Coding RNA Search

Ss1.1-Mixn-0012b16.5

Sequence:


               
               GGTTTCTGCCCCTGTGGGATGTGGCAGCCATTGACTTTGGCCAGACGAACCAGAAGTTTG
GGTTTGAACTGGCCCTGTCTGCTTTAGCAGCTGACAAGCTTCAGGGGTGGGAGGGATCAA
TGAGGGAGCTCCAGACGGGGCACATTTGGTGCTGAGGCTTTGAAGCCACCATATTTATCA
TCTCCTATGACTGTGGAGCCGGGGGAGAATCTGCTCATCACAGTCAAACAGTATTCCTTC
TCTATTCCGGGGGTCTGGTGCTGGACTCCCCCTGGCCCAGGAGTCCAGTTTCCCTGCACT
GCACCCCAGCTGGCATAACCGTAATCTGACTCTTTCTCCTCTCCATGCTCAGCTCCCTCC
TCCTGTGCCCCCCCAACCCCATGCAATGAACTTCTAACCCAGAGCTGTTGAATGCTCCTC
CCCCAATGCCTGCCTCCCACCCCAAAGTCGGTGCTCTCAACACCCTTTGGTGCTACCTTC
CCCATATAGTTAAGCACTGGATGTCTCCTGATCCCAGGCTGGGACCCCTTCGCTCATTCC
TAGTGTCAGGTGGGTTCACAGCAAAGGGACTCAAATCAGACTACAGAGGGAAGTGGGACT
TCCCGGGAGTGAGCTGTGTGCTCCCTCTGCTGCCTCAGCCCAACCCTGAATACCGCCTCC
CTCCACAGCTCCTCAATTGCATCTTGCCATGCCAGGTGACTTGGGGACCAAGACAGGGGG
TGTAAGTCAGGATCCTAATGGTGCTGCCCTATTTATACCTGGGTCTGTATTAAAAAGGGA
AAAATCCCCTCTGTTGTATATTTAATCTGCTTCCTCCATAGGGAAGGCTGGGATATGATG
AGAGAGATTCTAGTATGATCCCCATCTTCCCCCCATCTGCCCCTGGGCATAGGGCATAAT
TGGCATCTCGAGTCTGAGAATAAACCAGTGAACTGTGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTTCTGCCCCTGTGGGATGTGGCAGCCATTGACTTTGGCCAGACGAACCAGAAGTTTG
GGTTTGAACTGGCCCTGTCTGCTTTAGCAGCTGACAAGCTTCAGGGGTGGGAGGGATCAA
TGAGGGAGCTCCAGACGGGGCACATTTGGTGCTGAGGCTTTGAAGCCACCATATTTATCA
TCTCCTATGACTGTGGAGCCGGGGGAGAATCTGCTCATCACAGTCAAACAGTATTCCTTC
TCTATTCCGGGGGTCTGGTGCTGGACTCCCCCTGGCCCAGGAGTCCAGTTTCCCTGCACT
GCACCCCAGCTGGCATAACCGTAATCTGACTCTTTCTCCTCTCCATGCTCAGCTCCCTCC
TCCTGTGCCCCCCCAACCCCATGCAATGAACTTCTAACCCAGAGCTGTTGAATGCTCCTC
CCCCAATGCCTGCCTCCCACCCCAAAGTCGGTGCTCTCAACACCCTTTGGTGCTACCTTC
CCCATATAGTTAAGCACTGGATGTCTCCTGATCCCAGGCTGGGACCCCTTCGCTCATTCC
TAGTGTCAGGTGGGTTCACAGCAAAGGGACTCAAATCAGACTACAGAGGGAAGTGGGACT
TCCCGGGAGTGAGCTGTGTGCTCCCTCTGCTGCCTCAGCCCAACCCTGAATACCGCCTCC
CTCCACAGCTCCTCAATTGCATCTTGCCATGCCAGGTGACTTGGGGACCAAGACAGGGGG
TGTAAGTCAGGATCCTAATGGTGCTGCCCTATTTATACCTGGGTCTGTATTAAAAAGGGA
AAAATCCCCTCTGTTGTATATTTAATCTGCTTCCTCCATAGGGAAGGCTGGGATATGATG
AGAGAGATTCTAGTATGATCCCCATCTTCCCCCCATCTGCCCCTGGGCATAGGGCATAAT
TGGCATCTCGAGTCTGAGAATAAACCAGTGAACTGTGAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               3-120, - strand, RNAz p=0.737242
               

               
               271-379, - strand, RNAz p=0.973469
               

               
               414-681, - strand, RNAz p=0.978451

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-120, - strand, RNAz p=0.737242
               

               
               271-379, - strand, RNAz p=0.973469
               

               
               414-681, - strand, RNAz p=0.978451

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-937, gnl|bosTau2|chr7 (9801016-9801973)
               

               
               3-937, gnl|Hg17|chr19 (9932179-9931237)
               

               
               3-937, gnl|Mm7|chr9 (20640719-20639849)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-937, gnl|bosTau2|chr7 (9801016-9801973)
               

               
               3-937, gnl|Hg17|chr19 (9932179-9931237)
               

               
               3-937, gnl|Mm7|chr9 (20640719-20639849)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cga (0.279096)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               med (0.116252)

	3-120, - strand, RNAz p=0.737242
	271-379, - strand, RNAz p=0.973469
	414-681, - strand, RNAz p=0.978451

	3-937, gnl\|bosTau2\|chr7 (9801016-9801973)
	3-937, gnl\|Hg17\|chr19 (9932179-9931237)
	3-937, gnl\|Mm7\|chr9 (20640719-20639849)

	cga (0.279096)
	nep (0.183925)
	cag (0.151194)
	lnt (0.142308)
	nmm (0.132802)
	cov (0.132153)
	eep (0.122564)
	med (0.116252)