Non-Coding RNA Search

Ss1.1-Mixn-0012c21.5

Sequence:


               
               ACCCATGCTCCTTCTCTTCTCTCTCTGGGATGATTTTCCAAGGTCAAGGAGTTGGCCTTG
GGTTCCAACTTGACGAGCCATGGGCAACATATGTGGTCACTCTCTCCTTTGGGATCTAAA
GGGCACAAAGGTATGGAGGCCCCCAGTTGGAGGGCCTGAGCCCCATCTTGAATCAGCACA
AGTAGGAACCTTGAGGAACCCAGGTGAGGATATGATTTGTTCCCATTTGCTGCCTGACCT
GCGGCCCTTTCTGCGCTCAGCTTCCAATGGTAAACCAAGGAGGTGGATCAAGTGCCCTTC
CAAGGACACTTTCGTGCTCATGTTCCTGCATGCAGCTCCATCTTTCAGACCATGCTCTAT
GCAGGACAAGCCCGAAATAGCATCCCTCTCTCCTGCAATAATTTATTCCCTATATGGACC
GTCCTTCCCTCAAAGTACCCATCCTCCCTGCCTGGCCCAGATAAGCAGGGTGACAGGCCT
CCAAGGGGAGCCTGGGCGCCACAAGGCTGACTCGCCTTCACCTTCCCCTTAACTTCCCCT
AGGGCATGCTGCCCCTCTACAGTCCCTTCAGTGTATGTTGGGGGTGGGGGGGAGGAATAG
TCTAGAAATAAGTAGGACACAGTGCCTACTCTCAAGTTTGGTTGAGCCAAGTTCCAGAGA
GTTTTAAGAAATTGGATTAAGCTGGGTCCCAAGGTCAAGAAATTCCCACTATACTCTTTT
TTCTTTTCACTCTTCTCTGCTAATTTACAGAAAATGGGGCCCATTTCATCTCCTTCCCCC
ATGTTCCCATACAACTGGTTCGTTCTTCCTAGCTGCAGCTGGTTTCTCCAAGGCTCCTGC
TTAAAGTCAATATATTATTGTGGCTGTAAGCAATCTGGTGCTATGGCCTGGATAAGCCCC
CCCTTCTGCACCTTATTTCTTCCTTGCGCCCTCAGCCCTTCTGGGCAGCACAACTCCCAG
GGCTCCCTGGGCGGGGAGGGATCATGCCCCTGCTTCTGCAAACCTGAACTGTTTTGTTTT
GGCAGCATTACATTCATCATCATCCCATTGCCCCATCTGGAAGATGCCTGCTTCCTCCCC
TGCTGCCTGCAGCTGTAAACCAGAGGATATTAAACTAGTTTTACACACACACACACACAC
ACACACACACATATTTGTGGTCATTTCCCTTGGGATTAAGGAAGCCCCCTCCTCCCCACA
CACAAATTCATTCCCTCAGTGCTGCTGGCATATGCATACACAGATGTGTAAGTAGGTGTG
CATGTGTACTCTGTACATATAGCTATTCTTTCCTGAAGACCATGCTAACTTTATGAAACT
ACTTTCACATTCCAATGTGCTTCACAGCAGAGGAAATAAAGTGATATGAAAAATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCATGCTCCTTCTCTTCTCTCTCTGGGATGATTTTCCAAGGTCAAGGAGTTGGCCTTG
GGTTCCAACTTGACGAGCCATGGGCAACATATGTGGTCACTCTCTCCTTTGGGATCTAAA
GGGCACAAAGGTATGGAGGCCCCCAGTTGGAGGGCCTGAGCCCCATCTTGAATCAGCACA
AGTAGGAACCTTGAGGAACCCAGGTGAGGATATGATTTGTTCCCATTTGCTGCCTGACCT
GCGGCCCTTTCTGCGCTCAGCTTCCAATGGTAAACCAAGGAGGTGGATCAAGTGCCCTTC
CAAGGACACTTTCGTGCTCATGTTCCTGCATGCAGCTCCATCTTTCAGACCATGCTCTAT
GCAGGACAAGCCCGAAATAGCATCCCTCTCTCCTGCAATAATTTATTCCCTATATGGACC
GTCCTTCCCTCAAAGTACCCATCCTCCCTGCCTGGCCCAGATAAGCAGGGTGACAGGCCT
CCAAGGGGAGCCTGGGCGCCACAAGGCTGACTCGCCTTCACCTTCCCCTTAACTTCCCCT
AGGGCATGCTGCCCCTCTACAGTCCCTTCAGTGTATGTTGGGGGTGGGGGGGAGGAATAG
TCTAGAAATAAGTAGGACACAGTGCCTACTCTCAAGTTTGGTTGAGCCAAGTTCCAGAGA
GTTTTAAGAAATTGGATTAAGCTGGGTCCCAAGGTCAAGAAATTCCCACTATACTCTTTT
TTCTTTTCACTCTTCTCTGCTAATTTACAGAAAATGGGGCCCATTTCATCTCCTTCCCCC
ATGTTCCCATACAACTGGTTCGTTCTTCCTAGCTGCAGCTGGTTTCTCCAAGGCTCCTGC
TTAAAGTCAATATATTATTGTGGCTGTAAGCAATCTGGTGCTATGGCCTGGATAAGCCCC
CCCTTCTGCACCTTATTTCTTCCTTGCGCCCTCAGCCCTTCTGGGCAGCACAACTCCCAG
GGCTCCCTGGGCGGGGAGGGATCATGCCCCTGCTTCTGCAAACCTGAACTGTTTTGTTTT
GGCAGCATTACATTCATCATCATCCCATTGCCCCATCTGGAAGATGCCTGCTTCCTCCCC
TGCTGCCTGCAGCTGTAAACCAGAGGATATTAAACTAGTTTTACACACACACACACACAC
ACACACACACATATTTGTGGTCATTTCCCTTGGGATTAAGGAAGCCCCCTCCTCCCCACA
CACAAATTCATTCCCTCAGTGCTGCTGGCATATGCATACACAGATGTGTAAGTAGGTGTG
CATGTGTACTCTGTACATATAGCTATTCTTTCCTGAAGACCATGCTAACTTTATGAAACT
ACTTTCACATTCCAATGTGCTTCACAGCAGAGGAAATAAAGTGATATGAAAAATAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               801-920, - strand, RNAz p=0.926395

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               801-920, - strand, RNAz p=0.926395

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-1375, gnl|bosTau2|chr16 (2625008-2626362)
               

               
               20-1375, gnl|Hg17|chr1 (200188772-200190400)
               

               
               20-1375, gnl|Mm7|chr1 (133801373-133800100)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-1375, gnl|bosTau2|chr16 (2625008-2626362)
               

               
               20-1375, gnl|Hg17|chr1 (200188772-200190400)
               

               
               20-1375, gnl|Mm7|chr1 (133801373-133800100)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               mas (0.42061)
               

               
               jca (0.34188)
               

               
               csp (0.322373)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               hea (0.204499)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               jca (0.34188)
               

               
               csp (0.322373)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               hea (0.204499)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	20-1375, gnl\|bosTau2\|chr16 (2625008-2626362)
	20-1375, gnl\|Hg17\|chr1 (200188772-200190400)
	20-1375, gnl\|Mm7\|chr1 (133801373-133800100)

	mas (0.42061)
	jca (0.34188)
	csp (0.322373)
	nca (0.273748)
	cov (0.264306)
	hea (0.204499)
	fhi (0.169578)
	nco (0.161734)
	cag (0.151194)
	ste (0.135208)
	ute (0.132784)
	ova (0.129132)
	ese (0.126502)
	cly (0.120642)
	med (0.116252)
	eje (0.0988338)