Non-Coding RNA Search

Ss1.1-Mixn-0012e05.5

Sequence:


               
               TTATCCTTTAAGAGCAAATTTCTGGTTAGCTGTGCTTCTGCAATTTAAAATATTTAAAGG
GAGGTAGATGTGGATGGAAGGAGGATGGGTAGTTGGGCCAGGGTGAGAGAAATTAATTCC
GTGTAACTTGTCTGGGACTTCAGGCCCCATACAACATTAGTTTTACAGAAGCGGTACCAC
TTTTAATTGACAGACGTCACAGAGAGTTTATGAACTGAGTCTTAAGGGCAGTTTGTACAT
AGAGAAAGTAATCAGTGTCCTGGCTCATGCTCGGAAAGAATCTGCAGAGAGGTTCTCTCA
GAGATCAGAAAGGTGTGTTCCCAAGCCATGCACCCTGCTCACCAGCATTTCTGCATGGTC
AGACGAGCTTTATGCTCATGAGCTTTAACTGTATAATTACCCAGGATTGTAAACCCTCAA
CTTGTTCTAGCTTGTGATCCTTCAGAGTTGGATCAGGCGTTAGTTCTAGGTACTAGAAAT
GTTCATTTCCCTATCGCCATTGATCAGAGACAAATAATTAAAAACCAGAAATATGAAAAG
GAAAGCTTTCACCCTGTGACTTCCTAACTGGGGACAGTGATCTTGCCAAAACTTTTTCCC
CTTCCCTCTCCCATTTCTCTCCACCCAGCCCCTTCCCACTCCTTGCCAGTGTGACCATGC
TTTTCTTCTCTGTAGATGCTAACGGTTCAAGCCCCCTTTCCCAGGGCATTTAACCAGCCA
ATCACAACAGCACATCCTTTAGGAGAGGTAACCTGGCTGAGAGTGGTATCCATCACGTCA
GTTCTGCTGGAGGGAAGGGGCCCAGGTCCTGCTGCCCTTGGCCTGCTCCCTGCTCCCATA
TCTATTACTGTGTCCGTAGGAATACTAGGTAAGGGCTCCGTCTCTGTCAGCCATGTAATG
AAGGACATTGTGGGAAAATGTCTGGCATCAGAGGGAGCGTGTGGAGAGCAACTTGGGAGG
AACAAGTTTATTTTGTATTGAATGATTTTTAATGAATGCAATATTAATCCTTGCAGATGA
GCAATAATCATTAAAGTCAATTAAAATGATAAGACCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATCCTTTAAGAGCAAATTTCTGGTTAGCTGTGCTTCTGCAATTTAAAATATTTAAAGG
GAGGTAGATGTGGATGGAAGGAGGATGGGTAGTTGGGCCAGGGTGAGAGAAATTAATTCC
GTGTAACTTGTCTGGGACTTCAGGCCCCATACAACATTAGTTTTACAGAAGCGGTACCAC
TTTTAATTGACAGACGTCACAGAGAGTTTATGAACTGAGTCTTAAGGGCAGTTTGTACAT
AGAGAAAGTAATCAGTGTCCTGGCTCATGCTCGGAAAGAATCTGCAGAGAGGTTCTCTCA
GAGATCAGAAAGGTGTGTTCCCAAGCCATGCACCCTGCTCACCAGCATTTCTGCATGGTC
AGACGAGCTTTATGCTCATGAGCTTTAACTGTATAATTACCCAGGATTGTAAACCCTCAA
CTTGTTCTAGCTTGTGATCCTTCAGAGTTGGATCAGGCGTTAGTTCTAGGTACTAGAAAT
GTTCATTTCCCTATCGCCATTGATCAGAGACAAATAATTAAAAACCAGAAATATGAAAAG
GAAAGCTTTCACCCTGTGACTTCCTAACTGGGGACAGTGATCTTGCCAAAACTTTTTCCC
CTTCCCTCTCCCATTTCTCTCCACCCAGCCCCTTCCCACTCCTTGCCAGTGTGACCATGC
TTTTCTTCTCTGTAGATGCTAACGGTTCAAGCCCCCTTTCCCAGGGCATTTAACCAGCCA
ATCACAACAGCACATCCTTTAGGAGAGGTAACCTGGCTGAGAGTGGTATCCATCACGTCA
GTTCTGCTGGAGGGAAGGGGCCCAGGTCCTGCTGCCCTTGGCCTGCTCCCTGCTCCCATA
TCTATTACTGTGTCCGTAGGAATACTAGGTAAGGGCTCCGTCTCTGTCAGCCATGTAATG
AAGGACATTGTGGGAAAATGTCTGGCATCAGAGGGAGCGTGTGGAGAGCAACTTGGGAGG
AACAAGTTTATTTTGTATTGAATGATTTTTAATGAATGCAATATTAATCCTTGCAGATGA
GCAATAATCATTAAAGTCAATTAAAATGATAAGACCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               279-435, - strand, RNAz p=0.972707
               

               
               514-632, - strand, RNAz p=0.559533
               

               
               830-981, - strand, RNAz p=0.753434

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-435, - strand, RNAz p=0.972707
               

               
               514-632, - strand, RNAz p=0.559533
               

               
               830-981, - strand, RNAz p=0.753434

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-1056, gnl|bosTau2|chr3 (25419449-25418405)
               

               
               6-1056, gnl|Hg17|chr1 (110277345-110278403)
               

               
               6-1056, gnl|Mm7|chr3 (107482451-107481408)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1056, gnl|bosTau2|chr3 (25419449-25418405)
               

               
               6-1056, gnl|Hg17|chr1 (110277345-110278403)
               

               
               6-1056, gnl|Mm7|chr3 (107482451-107481408)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               fty (0.527519)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               jej (0.296765)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.527519)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               jej (0.296765)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	279-435, - strand, RNAz p=0.972707
	514-632, - strand, RNAz p=0.559533
	830-981, - strand, RNAz p=0.753434

	6-1056, gnl\|bosTau2\|chr3 (25419449-25418405)
	6-1056, gnl\|Hg17\|chr1 (110277345-110278403)
	6-1056, gnl\|Mm7\|chr3 (107482451-107481408)

	fty (0.527519)
	fcc (0.39557)
	elu (0.385356)
	fbs (0.350693)
	jej (0.296765)
	eep (0.245128)
	ebs (0.236602)
	mcp (0.170648)
	fhi (0.169578)
	cje (0.165235)
	hyp (0.142837)
	pla (0.133672)
	sug (0.127291)
	eru (0.120048)
	clu (0.119646)
	jca (0.11396)
	eje (0.0988338)