Ss1.1-Mixn-0012e07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCAGACCTGACTTGTAAAGTGCCTTTGGTTCTGGCTCCTGTGTGAGAGTGGACCCGTA GGGAGAGTGGTACAGAGGCTCCCACCGTGGGAGGTGGAGGCGAGCGGTGGTAGGATTACA GGCCATGTGTGTTTGGAGGGACCTGCTGACCATGTCGTGGCCTCTCCTTTGCAGAACTGG CTGCGGCTCTACGGCTACCTGCCCCAGCCCAGCCGCCACATGTCCACCATGCGCTCCGCC CAGATCCTGGCCTCGGCCCTTGCTGAGATGCAGCGCTTCTATGGGATCCCGGTCACTGGT GTGCTGGACGAAGAGACCAAGGCGTGGATGAAGCGGCCCCGCTGTGGGGTACCAGACCAG TTCGGGGTACGCGTGAAAGCTAATCTGCGGCGGCGGCGGAAGCGCTACGCCCTCACTGGG CGGAAATGGAACAACCACCACCTGACCTTCAGCATCCAGAACTACACAGAGAAGCTGGGC TGGTACCACTCCCTGGAGGCGGTGCGCCGGGCCTTCCGCGTGTGGGAGCAGGCCACACCC CTGGTCTTCCAGGAGGTGCCCTATGAGGACATTCGGCTGCGGCGGCAGAAGGAGGCTGAC ATCATGGTACTCTTTGCCTCTGGCTTCCATGGCGACAGCTCACCATTTGACGGCACGGGT GGCTTTCTGGCCCACGCCTATTTCCCTGGCCCTGGCCTAGGCGGGGACACCCATTTCGAT GCAGATGAGCCCTGGACCTTCTCCAGCACTGACCTGCATGGCAACAGCCTCTTCCTGGTG GCAGTGCACGAGCTGGGCCACGCGCTGGGGCTGGAGCACTCCAGCAACCCCAGCGCCATC ATGGCGCCGTTCTACCAGTGGATGGACATCGACAACTTCCAGCTGCCCCCGAGGACGACC TCCGGGGCATCCAGCAGCTCTACGGCACCCCGGATGGTCAGCCACAGCCCACCCGGCCTC TTCCCACTGTGACTCCTCGGCGGCCAGGCCGGCCAGACCACCGCCCTCCCCGGCCGCCTC AGCCACCACCTCCAGGCGGGAAGCCGGAGCGGCCCCCAAAGCCAGGTCCCCCAGCCCAGC CCCGAGCCACAGAGCGGCCTGACCAGTATGGCCCCAACATCTGCGACGGGGACTTTGACA CGGTGGCCATGCTGCGTGGGGAGATGTTCGTGTTCAAGGGCCGCTGGTTCTGGCGGGTCC GGCACAACCGCGTCCTGGACAACTATCCCATGCCCATCGGGCACTTCTGGCGCGGTCTGC CCAGTGACATCAGTGCTGCCTACGAGCGCCAAGATGGGCGTTTTGTCTTTTTCAAAGGTG ACCGCTATTGGCTCTTCCGAGAAGCCAACCTGGAGCCTGGCTACCCACAGCCGCTCCCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCAGACCTGACTTGTAAAGTGCCTTTGGTTCTGGCTCCTGTGTGAGAGTGGACCCGTA GGGAGAGTGGTACAGAGGCTCCCACCGTGGGAGGTGGAGGCGAGCGGTGGTAGGATTACA GGCCATGTGTGTTTGGAGGGACCTGCTGACCATGTCGTGGCCTCTCCTTTGCAGAACTGG CTGCGGCTCTACGGCTACCTGCCCCAGCCCAGCCGCCACATGTCCACCATGCGCTCCGCC CAGATCCTGGCCTCGGCCCTTGCTGAGATGCAGCGCTTCTATGGGATCCCGGTCACTGGT GTGCTGGACGAAGAGACCAAGGCGTGGATGAAGCGGCCCCGCTGTGGGGTACCAGACCAG TTCGGGGTACGCGTGAAAGCTAATCTGCGGCGGCGGCGGAAGCGCTACGCCCTCACTGGG CGGAAATGGAACAACCACCACCTGACCTTCAGCATCCAGAACTACACAGAGAAGCTGGGC TGGTACCACTCCCTGGAGGCGGTGCGCCGGGCCTTCCGCGTGTGGGAGCAGGCCACACCC CTGGTCTTCCAGGAGGTGCCCTATGAGGACATTCGGCTGCGGCGGCAGAAGGAGGCTGAC ATCATGGTACTCTTTGCCTCTGGCTTCCATGGCGACAGCTCACCATTTGACGGCACGGGT GGCTTTCTGGCCCACGCCTATTTCCCTGGCCCTGGCCTAGGCGGGGACACCCATTTCGAT GCAGATGAGCCCTGGACCTTCTCCAGCACTGACCTGCATGGCAACAGCCTCTTCCTGGTG GCAGTGCACGAGCTGGGCCACGCGCTGGGGCTGGAGCACTCCAGCAACCCCAGCGCCATC ATGGCGCCGTTCTACCAGTGGATGGACATCGACAACTTCCAGCTGCCCCCGAGGACGACC TCCGGGGCATCCAGCAGCTCTACGGCACCCCGGATGGTCAGCCACAGCCCACCCGGCCTC TTCCCACTGTGACTCCTCGGCGGCCAGGCCGGCCAGACCACCGCCCTCCCCGGCCGCCTC AGCCACCACCTCCAGGCGGGAAGCCGGAGCGGCCCCCAAAGCCAGGTCCCCCAGCCCAGC CCCGAGCCACAGAGCGGCCTGACCAGTATGGCCCCAACATCTGCGACGGGGACTTTGACA CGGTGGCCATGCTGCGTGGGGAGATGTTCGTGTTCAAGGGCCGCTGGTTCTGGCGGGTCC GGCACAACCGCGTCCTGGACAACTATCCCATGCCCATCGGGCACTTCTGGCGCGGTCTGC CCAGTGACATCAGTGCTGCCTACGAGCGCCAAGATGGGCGTTTTGTCTTTTTCAAAGGTG ACCGCTATTGGCTCTTCCGAGAAGCCAACCTGGAGCCTGGCTACCCACAGCCGCTCCCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 139-253, - strand, RNAz p=0.977946 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 139-253, - strand, RNAz p=0.977946 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 60-326, gnl|bosTau2|chr18 (22889901-22890182) | |
| 60-326, gnl|Hg17|chr16 (56628720-56629028) | |
| 444-737, gnl|bosTau2|chr10 (14163229-14162937) | |
| 444-737, gnl|Hg17|chr14 (22381451-22381743) | |
| 444-737, gnl|Mm7|chr14 (49303631-49303922) | |
| 753-925, gnl|bosTau2|chr10 (14162371-14162202) | |
| 753-925, gnl|Hg17|chr14 (22382299-22382468) | |
| 753-925, gnl|Mm7|chr14 (49304617-49304786) | |
| 1177-1323, gnl|bosTau2|chr10 (14161388-14161242) | |
| 1177-1323, gnl|canFam2|chr8 (6193821-6193915) | |
| 1177-1323, gnl|danRer3|chr2 (34205021-34204927) | |
| 1177-1323, gnl|dasNov1|scaffold_54810 (7962-7868) | |
| 1177-1323, gnl|echTel1|scaffold_244123 (864-770) | |
| 1177-1323, gnl|fr1|chrUn (68367452-68367546) | |
| 1177-1323, gnl|galGal2|chr11 (435565-435471) | |
| 1177-1323, gnl|hg17|chr14 (22383419-22383513) | |
| 1177-1323, gnl|Hg17|chr14 (22383418-22383564) | |
| 1177-1323, gnl|loxAfr1|scaffold_41187 (5234-5328) | |
| 1177-1323, gnl|mm7|chr14 (49306085-49306179) | |
| 1177-1323, gnl|Mm7|chr14 (49306084-49306230) | |
| 1177-1323, gnl|monDom2|scaffold_12 (27025837-27025743) | |
| 1177-1323, gnl|oryCun1|scaffold_207495 (148214-148308) | |
| 1177-1323, gnl|panTro1|chr15 (21346971-21347065) | |
| 1177-1323, gnl|rheMac2|chr7 (85657027-85657121) | |
| 1177-1323, gnl|rn3|chr15 (32516604-32516698) | |
| 1177-1323, gnl|tetNig1|chr15 (2164848-2164754) | |
| 1177-1323, gnl|xenTro1|scaffold_963 (232109-232203) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 60-326, gnl|bosTau2|chr18 (22889901-22890182) | |
| 60-326, gnl|Hg17|chr16 (56628720-56629028) | |
| 444-737, gnl|bosTau2|chr10 (14163229-14162937) | |
| 444-737, gnl|Hg17|chr14 (22381451-22381743) | |
| 444-737, gnl|Mm7|chr14 (49303631-49303922) | |
| 753-925, gnl|bosTau2|chr10 (14162371-14162202) | |
| 753-925, gnl|Hg17|chr14 (22382299-22382468) | |
| 753-925, gnl|Mm7|chr14 (49304617-49304786) | |
| 1177-1323, gnl|bosTau2|chr10 (14161388-14161242) | |
| 1177-1323, gnl|canFam2|chr8 (6193821-6193915) | |
| 1177-1323, gnl|danRer3|chr2 (34205021-34204927) | |
| 1177-1323, gnl|dasNov1|scaffold_54810 (7962-7868) | |
| 1177-1323, gnl|echTel1|scaffold_244123 (864-770) | |
| 1177-1323, gnl|fr1|chrUn (68367452-68367546) | |
| 1177-1323, gnl|galGal2|chr11 (435565-435471) | |
| 1177-1323, gnl|hg17|chr14 (22383419-22383513) | |
| 1177-1323, gnl|Hg17|chr14 (22383418-22383564) | |
| 1177-1323, gnl|loxAfr1|scaffold_41187 (5234-5328) | |
| 1177-1323, gnl|mm7|chr14 (49306085-49306179) | |
| 1177-1323, gnl|Mm7|chr14 (49306084-49306230) | |
| 1177-1323, gnl|monDom2|scaffold_12 (27025837-27025743) | |
| 1177-1323, gnl|oryCun1|scaffold_207495 (148214-148308) | |
| 1177-1323, gnl|panTro1|chr15 (21346971-21347065) | |
| 1177-1323, gnl|rheMac2|chr7 (85657027-85657121) | |
| 1177-1323, gnl|rn3|chr15 (32516604-32516698) | |
| 1177-1323, gnl|tetNig1|chr15 (2164848-2164754) | |
| 1177-1323, gnl|xenTro1|scaffold_963 (232109-232203) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |