Non-Coding RNA Search

Ss1.1-Mixn-0012e20.5

Sequence:


               
               ACCCTCGTTGGCCAGGCTGCTCTCCTGGCCTCACACAGCACACACGGTGACATACTTTCA
TTATCCCAGCCAGACCCACTCACGTGGCTGGGAGTGTGTGGCAGGGAGAGACTGCTGTCC
TCTAAAATGGCTGAAGAGAGGGAACTCTTGAAATGTTCATAACAGGAACCCCACCCCCTA
ACCCTGGAGAAGGCGAAGGCTCTGTCCAGCGCTGGGTCCAGTGGAAGCGCCCACAGCCTG
CCCAGCAATGCACTGTGGTCCTGGAGTAAGAATTGGACACCAGATGAGGTGGCCTTTCAG
GTGTCACGTCCCTGGAGAGGGTGACCCAGCTTCTGACAAACCTGTGGAAGAGACCTGATT
CCACTACCTGAGTGTTCAAAAGGTGAAATGCCTTCACCCTTCATCTGTCCTGTCCCCAGA
GGGATGACTCTCACATATCAGAGCTGGAAATCCAGAACACGGTGGGAGGAAGAAGGTCGG
CCTGCTGGGGAGAAGGCAACGGCAGGCCTGGGATGACTGTGGGGAGACCCTTCTTGACAT
CTGCATAAAGTCCCCACCCCACCCAAGTGCCAGGTCGGAAAGCACTGCTGAGAGGGGCGA
AGCAGGCCTGCCCGCCTCTGCTGACAGAGTCACCCAATGGGGTGTTCTGCTGAGCCTGAG
GAAGAGGAGATGAGTCCCCAGGCAGGTTTCTTCCTTCTACGATGGTAGCAGAAACTTCAG
TTGCGGAGACACCACCTTGTGATGAAGCCAGAAGCAGATCCCCTTGGAAACAGGTCTGGG
AATCTGTCTCTAGGAAAGTCCTGGGGAGCAGCCTTTGGGGCTCTGGAGCCAGTGCTGGGG
GGAGATGGGTCTGTAAGTTCAAAGGCTCATGGGAGGCCTATTGAGGACTAGGGTGTAGCA
TACATAGTAGGATGCTCGCATGTTGTAGGGATGGGCGAGGGCCAGGGGTCTTGGCTCCGG
TACAGAGTGGATGATGTGGACACAATTAGTTGGGGTCTGGGGTTTCATAGCATGAAAGGG
GGCAGGGTCGGAGACTCCTGGGTGTGACCTGTTCGCTGTTGGCCAACTCCGCAAACTCCT
TTAGCCTGGTGCTTCCCTCCCAGAGCAACCTCTCTGCTGGGAGGATCTAAGCAGGGAGCA
GGCTGGGGAGGTGGCGGTGTCCAGAGTCCCCAGCTCAGGCCAAGGCCCAGGGGTTGTGGC
ACTTTCCCACCAGAACTGAATCTGGAAAGCAGAGTGTAGGCAAGCCCTCTTGTCCGACTC
CACGCAGGCCTGACTCTTCACAAGTGCCTGGTGGGGGAACCCAAGGCAGGGTCACAGTGT
CATTGGTGAAAGCTGAGGGGAGAATAGAAACTGATCTGAGCTTTAGGGTGAAACTTGAAA
CTGCTATGGATATGGAGGTCAGATGGGAGCTTGAGAGAATGGGGCCTGAATCCTGAAGGG
TGGGGAAACTTGAAACCATCACAACCAAAAGATGGGGTTCCATGGCACCCCGCCCCTGAG
GGGAGCGGCCCCAGACTCCTTTGTCTCCATTAGGGAAGCCCCACTCCCCTGACTTGTCCC
CCTGGAGTGAAGAGAGACCCCCACTTTGAGTGTTGTGTGTCAATAACAGTGTTGTGTCAC
CGGTGGTCATGTTGATTAGTTGAAGAGAATAAAGGGAATCAGACGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCTCGTTGGCCAGGCTGCTCTCCTGGCCTCACACAGCACACACGGTGACATACTTTCA
TTATCCCAGCCAGACCCACTCACGTGGCTGGGAGTGTGTGGCAGGGAGAGACTGCTGTCC
TCTAAAATGGCTGAAGAGAGGGAACTCTTGAAATGTTCATAACAGGAACCCCACCCCCTA
ACCCTGGAGAAGGCGAAGGCTCTGTCCAGCGCTGGGTCCAGTGGAAGCGCCCACAGCCTG
CCCAGCAATGCACTGTGGTCCTGGAGTAAGAATTGGACACCAGATGAGGTGGCCTTTCAG
GTGTCACGTCCCTGGAGAGGGTGACCCAGCTTCTGACAAACCTGTGGAAGAGACCTGATT
CCACTACCTGAGTGTTCAAAAGGTGAAATGCCTTCACCCTTCATCTGTCCTGTCCCCAGA
GGGATGACTCTCACATATCAGAGCTGGAAATCCAGAACACGGTGGGAGGAAGAAGGTCGG
CCTGCTGGGGAGAAGGCAACGGCAGGCCTGGGATGACTGTGGGGAGACCCTTCTTGACAT
CTGCATAAAGTCCCCACCCCACCCAAGTGCCAGGTCGGAAAGCACTGCTGAGAGGGGCGA
AGCAGGCCTGCCCGCCTCTGCTGACAGAGTCACCCAATGGGGTGTTCTGCTGAGCCTGAG
GAAGAGGAGATGAGTCCCCAGGCAGGTTTCTTCCTTCTACGATGGTAGCAGAAACTTCAG
TTGCGGAGACACCACCTTGTGATGAAGCCAGAAGCAGATCCCCTTGGAAACAGGTCTGGG
AATCTGTCTCTAGGAAAGTCCTGGGGAGCAGCCTTTGGGGCTCTGGAGCCAGTGCTGGGG
GGAGATGGGTCTGTAAGTTCAAAGGCTCATGGGAGGCCTATTGAGGACTAGGGTGTAGCA
TACATAGTAGGATGCTCGCATGTTGTAGGGATGGGCGAGGGCCAGGGGTCTTGGCTCCGG
TACAGAGTGGATGATGTGGACACAATTAGTTGGGGTCTGGGGTTTCATAGCATGAAAGGG
GGCAGGGTCGGAGACTCCTGGGTGTGACCTGTTCGCTGTTGGCCAACTCCGCAAACTCCT
TTAGCCTGGTGCTTCCCTCCCAGAGCAACCTCTCTGCTGGGAGGATCTAAGCAGGGAGCA
GGCTGGGGAGGTGGCGGTGTCCAGAGTCCCCAGCTCAGGCCAAGGCCCAGGGGTTGTGGC
ACTTTCCCACCAGAACTGAATCTGGAAAGCAGAGTGTAGGCAAGCCCTCTTGTCCGACTC
CACGCAGGCCTGACTCTTCACAAGTGCCTGGTGGGGGAACCCAAGGCAGGGTCACAGTGT
CATTGGTGAAAGCTGAGGGGAGAATAGAAACTGATCTGAGCTTTAGGGTGAAACTTGAAA
CTGCTATGGATATGGAGGTCAGATGGGAGCTTGAGAGAATGGGGCCTGAATCCTGAAGGG
TGGGGAAACTTGAAACCATCACAACCAAAAGATGGGGTTCCATGGCACCCCGCCCCTGAG
GGGAGCGGCCCCAGACTCCTTTGTCTCCATTAGGGAAGCCCCACTCCCCTGACTTGTCCC
CCTGGAGTGAAGAGAGACCCCCACTTTGAGTGTTGTGTGTCAATAACAGTGTTGTGTCAC
CGGTGGTCATGTTGATTAGTTGAAGAGAATAAAGGGAATCAGACGTCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               726-884, - strand, RNAz p=0.999995
               

               
               1043-1196, - strand, RNAz p=0.997948

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               726-884, - strand, RNAz p=0.999995
               

               
               1043-1196, - strand, RNAz p=0.997948

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               1091-1194, + strand, RNAmicro p=0.996943

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1091-1194, + strand, RNAmicro p=0.996943

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-1663, gnl|bosTau2|chr25 (25656000-25657626)
               

               
               1-1663, gnl|Hg17|chr16 (30698927-30697282)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1663, gnl|bosTau2|chr25 (25656000-25657626)
               

               
               1-1663, gnl|Hg17|chr16 (30698927-30697282)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               ecc (0.23007)
               

               
               ton (0.1755)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               ton (0.1755)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	726-884, - strand, RNAz p=0.999995
	1043-1196, - strand, RNAz p=0.997948

	1-1663, gnl\|bosTau2\|chr25 (25656000-25657626)
	1-1663, gnl\|Hg17\|chr16 (30698927-30697282)

	ecc (0.23007)
	ton (0.1755)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)