Non-Coding RNA Search

Ss1.1-Mixn-0012f11.5

Sequence:


               
               CAGTGCACAAAGAATCACAGAGGTGCTGGGCTGGCACCGCACACCAAGCAGATGTGTCTA
GAGCCTGAGAGGGAGGAGATGGTGGTGAGCCCCTGGCTGGTGCCTCCAGACGTCCGTGCC
TTGCTCCGCGGGAGCCAGAGTTCCCTTCTGCAGGACTCTGTGGGCGGCCCAGACAGCCTG
TCTGCCAGCACCGGCAGCATCCTCAGCAAGCTCGACTGGGACGCCATTGAGGACATGGTG
GCCGACGTGGAGGATAAGAGCCATCTGTCCACCGGCCCTGGACCGTGAGACCTGAGTGTC
ACTCTGCCTCCACACAAAGGCCAGCAGCTCCGTGATGTTGCTGAGAGAGTTTGGGTTTCA
GGGAGAGAAGCAATGAAGTGAGGTGAAACTTACCATCAGCAGGCCTATCACCTGCATTAG
ACATTTCAAGAGGGAGAATAAACATTTCTCAGTAACTTTGCCTTCAGGGGGAAAGGGTTA
ACTGTAGATGTATTTTATGTTTTTGCATTTGACTTATCTTTAGGTATAATTTTTAAATAA
TGAAATAAATGGTACCTTTCAACCCAAGTTTGTATAATATTTAAACTACTTTCAAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTGCACAAAGAATCACAGAGGTGCTGGGCTGGCACCGCACACCAAGCAGATGTGTCTA
GAGCCTGAGAGGGAGGAGATGGTGGTGAGCCCCTGGCTGGTGCCTCCAGACGTCCGTGCC
TTGCTCCGCGGGAGCCAGAGTTCCCTTCTGCAGGACTCTGTGGGCGGCCCAGACAGCCTG
TCTGCCAGCACCGGCAGCATCCTCAGCAAGCTCGACTGGGACGCCATTGAGGACATGGTG
GCCGACGTGGAGGATAAGAGCCATCTGTCCACCGGCCCTGGACCGTGAGACCTGAGTGTC
ACTCTGCCTCCACACAAAGGCCAGCAGCTCCGTGATGTTGCTGAGAGAGTTTGGGTTTCA
GGGAGAGAAGCAATGAAGTGAGGTGAAACTTACCATCAGCAGGCCTATCACCTGCATTAG
ACATTTCAAGAGGGAGAATAAACATTTCTCAGTAACTTTGCCTTCAGGGGGAAAGGGTTA
ACTGTAGATGTATTTTATGTTTTTGCATTTGACTTATCTTTAGGTATAATTTTTAAATAA
TGAAATAAATGGTACCTTTCAACCCAAGTTTGTATAATATTTAAACTACTTTCAAATAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61819803|ref|XP_581609.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61819803|ref|XP_581609.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-351, + strand, RNAz p=0.526709

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-351, + strand, RNAz p=0.526709

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK096581, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK096581, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-154, gnl|bosTau2|chr20 (24611709-24611556)
               

               
               1-154, gnl|Hg17|chr5 (37144304-37144151)
               

               
               1-154, gnl|Mm7|chr15 (8096460-8096619)
               


               
               160-600, gnl|bosTau2|chr20 (24611007-24610558)
               

               
               160-600, gnl|Hg17|chr5 (37143592-37143155)
               

               
               160-600, gnl|Mm7|chr15 (8097545-8097965)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr20 (24611709-24611556)
               

               
               1-154, gnl|Hg17|chr5 (37144304-37144151)
               

               
               1-154, gnl|Mm7|chr15 (8096460-8096619)
               


               
               160-600, gnl|bosTau2|chr20 (24611007-24610558)
               

               
               160-600, gnl|Hg17|chr5 (37143592-37143155)
               

               
               160-600, gnl|Mm7|chr15 (8097545-8097965)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sme (0.305437)
               

               
               cte (0.29274)
               

               
               fcc (0.197785)
               

               
               sug (0.127291)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               fcc (0.197785)
               

               
               sug (0.127291)

	1-154, gnl\|bosTau2\|chr20 (24611709-24611556)
	1-154, gnl\|Hg17\|chr5 (37144304-37144151)
	1-154, gnl\|Mm7\|chr15 (8096460-8096619)

	160-600, gnl\|bosTau2\|chr20 (24611007-24610558)
	160-600, gnl\|Hg17\|chr5 (37143592-37143155)
	160-600, gnl\|Mm7\|chr15 (8097545-8097965)