Non-Coding RNA Search

Ss1.1-Mixn-0012g11.5

Sequence:


               
               GCCGGGAACGCGCCGGGACGTTCTAGAACGAGAGCCTGGGAGAAGGCAGCGAGTGCCAGG
GTAGCTGTAAACGGATGTGGGATGGAGCCGGACCCGGGGAATCTAGCACCACGTTTTCCT
AGCAGTGTTTCAAGAACTCTAACCCTCGCAGGTGCTCTTCGGGAGCTTTGACCGTACTTC
CCTGTAAAGTAAAACCTTTCTTAGGAAAGTACAGACCACCTTCAAAAAGGACAATAGGAT
CTTCTTCGAGAAATGATCTACGTGACAAGGAGAGTTGGCAATGAAGGATGACTCTTCTTG
GTTAAGTGGAGGAGGAAAGATGCAGTAAAACAGCGGGCCCCCCTCCCATTTCAGAAGCCA
GCGATGTCGCCCTTAGTAATCGCGTCTGTGTGTATGACTGAATAAACTAATTGTAAAGAG
GCCTAGATTGTAGCATTTCCTTCGGCTATAGCGTCAAACAAAACAGTAAGGAAGAGCTTC
AAAAAAGCCTCCATCCGTAGCTCGCTCCCTCTTCAAAAATAAAGTCTAATGTTAAACGAA
AAACTACAAATCGACGTAATCAAAAGCAAATCCCGGCAAGAGCAGAAGGTACTTGAAACA
CGAATCTGCATTCCGTTCCTCCCGTACGCGGCTCTGAGGTGGGGGAGGCGGTTTGTGCTG
GTGCCTGGTGTATAATCGGGTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGGAACGCGCCGGGACGTTCTAGAACGAGAGCCTGGGAGAAGGCAGCGAGTGCCAGG
GTAGCTGTAAACGGATGTGGGATGGAGCCGGACCCGGGGAATCTAGCACCACGTTTTCCT
AGCAGTGTTTCAAGAACTCTAACCCTCGCAGGTGCTCTTCGGGAGCTTTGACCGTACTTC
CCTGTAAAGTAAAACCTTTCTTAGGAAAGTACAGACCACCTTCAAAAAGGACAATAGGAT
CTTCTTCGAGAAATGATCTACGTGACAAGGAGAGTTGGCAATGAAGGATGACTCTTCTTG
GTTAAGTGGAGGAGGAAAGATGCAGTAAAACAGCGGGCCCCCCTCCCATTTCAGAAGCCA
GCGATGTCGCCCTTAGTAATCGCGTCTGTGTGTATGACTGAATAAACTAATTGTAAAGAG
GCCTAGATTGTAGCATTTCCTTCGGCTATAGCGTCAAACAAAACAGTAAGGAAGAGCTTC
AAAAAAGCCTCCATCCGTAGCTCGCTCCCTCTTCAAAAATAAAGTCTAATGTTAAACGAA
AAACTACAAATCGACGTAATCAAAAGCAAATCCCGGCAAGAGCAGAAGGTACTTGAAACA
CGAATCTGCATTCCGTTCCTCCCGTACGCGGCTCTGAGGTGGGGGAGGCGGTTTGTGCTG
GTGCCTGGTGTATAATCGGGTTAA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-201, gnl|bosTau2|chr12 (31569294-31569506)
               

               
               1-201, gnl|canFam2|chr22 (36322735-36323077)
               

               
               1-201, gnl|dasNov1|scaffold_7387 (31347-31013)
               

               
               1-201, gnl|hg17|chr13 (79814518-79814859)
               

               
               1-201, gnl|Hg17|chr13 (79814868-79814652)
               

               
               1-201, gnl|loxAfr1|scaffold_3802 (36367-36689)
               

               
               1-201, gnl|mm7|chr14 (100328185-100328495)
               

               
               1-201, gnl|Mm7|chr14 (100328509-100328303)
               

               
               1-201, gnl|oryCun1|scaffold_202349 (2806-2557)
               

               
               1-201, gnl|panTro1|chr14 (62501901-62502244)
               

               
               1-201, gnl|rheMac2|chr17 (60821665-60822006)
               

               
               1-201, gnl|rn3|chr15 (90030860-90031175)
               


               
               213-410, gnl|bosTau2|chr12 (31569673-31569862)
               


               
               537-684, gnl|bosTau2|chr12 (31569859-31570005)
               

               
               537-684, gnl|Hg17|chr13 (79814171-79814025)
               

               
               537-684, gnl|Mm7|chr14 (100327862-100327714)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-201, gnl|bosTau2|chr12 (31569294-31569506)
               

               
               1-201, gnl|canFam2|chr22 (36322735-36323077)
               

               
               1-201, gnl|dasNov1|scaffold_7387 (31347-31013)
               

               
               1-201, gnl|hg17|chr13 (79814518-79814859)
               

               
               1-201, gnl|Hg17|chr13 (79814868-79814652)
               

               
               1-201, gnl|loxAfr1|scaffold_3802 (36367-36689)
               

               
               1-201, gnl|mm7|chr14 (100328185-100328495)
               

               
               1-201, gnl|Mm7|chr14 (100328509-100328303)
               

               
               1-201, gnl|oryCun1|scaffold_202349 (2806-2557)
               

               
               1-201, gnl|panTro1|chr14 (62501901-62502244)
               

               
               1-201, gnl|rheMac2|chr17 (60821665-60822006)
               

               
               1-201, gnl|rn3|chr15 (90030860-90031175)
               


               
               213-410, gnl|bosTau2|chr12 (31569673-31569862)
               


               
               537-684, gnl|bosTau2|chr12 (31569859-31570005)
               

               
               537-684, gnl|Hg17|chr13 (79814171-79814025)
               

               
               537-684, gnl|Mm7|chr14 (100327862-100327714)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-201, gnl\|bosTau2\|chr12 (31569294-31569506)
	1-201, gnl\|canFam2\|chr22 (36322735-36323077)
	1-201, gnl\|dasNov1\|scaffold_7387 (31347-31013)
	1-201, gnl\|hg17\|chr13 (79814518-79814859)
	1-201, gnl\|Hg17\|chr13 (79814868-79814652)
	1-201, gnl\|loxAfr1\|scaffold_3802 (36367-36689)
	1-201, gnl\|mm7\|chr14 (100328185-100328495)
	1-201, gnl\|Mm7\|chr14 (100328509-100328303)
	1-201, gnl\|oryCun1\|scaffold_202349 (2806-2557)
	1-201, gnl\|panTro1\|chr14 (62501901-62502244)
	1-201, gnl\|rheMac2\|chr17 (60821665-60822006)
	1-201, gnl\|rn3\|chr15 (90030860-90031175)

	213-410, gnl\|bosTau2\|chr12 (31569673-31569862)

	537-684, gnl\|bosTau2\|chr12 (31569859-31570005)
	537-684, gnl\|Hg17\|chr13 (79814171-79814025)
	537-684, gnl\|Mm7\|chr14 (100327862-100327714)