Non-Coding RNA Search

Ss1.1-Mixn-0012i14.5

Sequence:


               
               CCTGTGCCCTCCACCCCTCCCCTGCTTCCTCATTTGTTCCAGGCTCTACCCCATCCCCAG
TCCAGGGCAGGCCGGTGCTATTGGTGCTTCTTTACTTCGGGACCCAGTTCCATATTTGTC
TTTGGTGTGTCTCTTCTTCCTGACGCCCCCTTCAGTGCCTCTCTGGACGCCAGGGCCTCA
GAGTCAGTGCTGACCGGATAAGGGCCATGTGTCTGCCACCCAGCTCAGAGCACTGCAGTC
TGCTCTAGCCGTAGGGCTGCCCAGGGAAGAACGAAGAAGGAGGAATCCAGCCATTTTCCA
ATGCAGTGCCAATTAGCCCACGCATCATCCCAAAGGTGAAAGTGCCCTGTGCCCGTCTCC
TCTCAGGACCGAGTCTACCCCTCCCACATCCTCACCCCACTAAGCACCCTCCACAGGAAC
CTGTGCATTACTGGGGTACCCAGGCCGCAGGACCTTTGACTTCGAGCCCTTCGTTTCTTC
TTTGGGTCACATTTTCCCCACTCGACAGAGAAATGTGAGATTTACATCTTCAAATGCTCC
ACCAGAGTCCTTCAAGGAAACTTTACCATACTTGTTTTTTCGACTTGGGGGAAGAGATTT
GAGGAGGGAACATAGGAGATGGGGAAGGAGAGTGTTTCTAAGTCTGAACCTCTCTCTGTC
CTGAGCTGTCCCCAAGGTTACTCAAGGACAAGAGGGGGGACAGTTTTGTCTACAGCTTCA
GAGACCAAAGAACAAAGGGGTGATCTTCATTTTCCTCCAAGCTGGCCCCCGGGGAGGGTC
TGTAAACAACTTCTACTGGAACTTTGTTTTGGCTTCTGTGTACATATTTATAATTTATCT
GAATATTGAGGNATAAAGTGTTCTCATTTGGGGCCAAAGTTACTAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTGCCCTCCACCCCTCCCCTGCTTCCTCATTTGTTCCAGGCTCTACCCCATCCCCAG
TCCAGGGCAGGCCGGTGCTATTGGTGCTTCTTTACTTCGGGACCCAGTTCCATATTTGTC
TTTGGTGTGTCTCTTCTTCCTGACGCCCCCTTCAGTGCCTCTCTGGACGCCAGGGCCTCA
GAGTCAGTGCTGACCGGATAAGGGCCATGTGTCTGCCACCCAGCTCAGAGCACTGCAGTC
TGCTCTAGCCGTAGGGCTGCCCAGGGAAGAACGAAGAAGGAGGAATCCAGCCATTTTCCA
ATGCAGTGCCAATTAGCCCACGCATCATCCCAAAGGTGAAAGTGCCCTGTGCCCGTCTCC
TCTCAGGACCGAGTCTACCCCTCCCACATCCTCACCCCACTAAGCACCCTCCACAGGAAC
CTGTGCATTACTGGGGTACCCAGGCCGCAGGACCTTTGACTTCGAGCCCTTCGTTTCTTC
TTTGGGTCACATTTTCCCCACTCGACAGAGAAATGTGAGATTTACATCTTCAAATGCTCC
ACCAGAGTCCTTCAAGGAAACTTTACCATACTTGTTTTTTCGACTTGGGGGAAGAGATTT
GAGGAGGGAACATAGGAGATGGGGAAGGAGAGTGTTTCTAAGTCTGAACCTCTCTCTGTC
CTGAGCTGTCCCCAAGGTTACTCAAGGACAAGAGGGGGGACAGTTTTGTCTACAGCTTCA
GAGACCAAAGAACAAAGGGGTGATCTTCATTTTCCTCCAAGCTGGCCCCCGGGGAGGGTC
TGTAAACAACTTCTACTGGAACTTTGTTTTGGCTTCTGTGTACATATTTATAATTTATCT
GAATATTGAGGNATAAAGTGTTCTCATTTGGGGCCAAAGTTACTAACT

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               128-284, - strand, RNAz p=0.979308
               

               
               130-271, - strand, RNAz p=0.964032
               

               
               577-680, - strand, RNAz p=0.921844
               

               
               594-751, + strand, RNAz p=0.939708

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-284, - strand, RNAz p=0.979308
               

               
               130-271, - strand, RNAz p=0.964032
               

               
               577-680, - strand, RNAz p=0.921844
               

               
               594-751, + strand, RNAz p=0.939708

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001006603, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001006603, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               48-886, gnl|bosTau2|chr3 (25980957-25980133)
               

               
               48-886, gnl|canFam2|chr6 (45438262-45437296)
               

               
               48-886, gnl|echTel1|scaffold_322314 (43489-44396)
               

               
               48-886, gnl|hg17|chr1 (109735210-109736155)
               

               
               48-886, gnl|Hg17|chr1 (109735432-109736222)
               

               
               48-886, gnl|mm7|chr3 (108032144-108031180)
               

               
               48-886, gnl|Mm7|chr3 (108031935-108031110)
               

               
               48-886, gnl|monDom2|scaffold_0 (7169621-7168744)
               

               
               48-886, gnl|oryCun1|scaffold_208853 (17818-18741)
               

               
               48-886, gnl|panTro1|chr1 (108665463-108666408)
               

               
               48-886, gnl|rheMac2|chr1 (112540016-112540956)
               

               
               48-886, gnl|rn3|chr2 (203742065-203741108)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-886, gnl|bosTau2|chr3 (25980957-25980133)
               

               
               48-886, gnl|canFam2|chr6 (45438262-45437296)
               

               
               48-886, gnl|echTel1|scaffold_322314 (43489-44396)
               

               
               48-886, gnl|hg17|chr1 (109735210-109736155)
               

               
               48-886, gnl|Hg17|chr1 (109735432-109736222)
               

               
               48-886, gnl|mm7|chr3 (108032144-108031180)
               

               
               48-886, gnl|Mm7|chr3 (108031935-108031110)
               

               
               48-886, gnl|monDom2|scaffold_0 (7169621-7168744)
               

               
               48-886, gnl|oryCun1|scaffold_208853 (17818-18741)
               

               
               48-886, gnl|panTro1|chr1 (108665463-108666408)
               

               
               48-886, gnl|rheMac2|chr1 (112540016-112540956)
               

               
               48-886, gnl|rn3|chr2 (203742065-203741108)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	128-284, - strand, RNAz p=0.979308
	130-271, - strand, RNAz p=0.964032
	577-680, - strand, RNAz p=0.921844
	594-751, + strand, RNAz p=0.939708

	48-886, gnl\|bosTau2\|chr3 (25980957-25980133)
	48-886, gnl\|canFam2\|chr6 (45438262-45437296)
	48-886, gnl\|echTel1\|scaffold_322314 (43489-44396)
	48-886, gnl\|hg17\|chr1 (109735210-109736155)
	48-886, gnl\|Hg17\|chr1 (109735432-109736222)
	48-886, gnl\|mm7\|chr3 (108032144-108031180)
	48-886, gnl\|Mm7\|chr3 (108031935-108031110)
	48-886, gnl\|monDom2\|scaffold_0 (7169621-7168744)
	48-886, gnl\|oryCun1\|scaffold_208853 (17818-18741)
	48-886, gnl\|panTro1\|chr1 (108665463-108666408)
	48-886, gnl\|rheMac2\|chr1 (112540016-112540956)
	48-886, gnl\|rn3\|chr2 (203742065-203741108)