Non-Coding RNA Search

Ss1.1-Mixn-0012j05.5

Sequence:


               
               CTCGCAGCGCCGCCTCCGCAGGCTGGCCACGATGCCTGTCGCCGTGGACGACATCATGAA
GCTGCTGTGCTCCATCTCCGAGCAGAGGAAAATGCAGGCGGCCGTCAAGCACTCCGGGAG
GGGTGCCCTGGTCACCGGGGCCGTGGCCTTCGTTGGTGGTTTGATGGGCGGTCCCCCAGG
ACTAGCTGTTGGGGGGGCCGTCGGGGGTCTGTTAGGTGCGTGGATGACGAGTGGACAGTT
TAAGCCCGTTCCTCAGATCATTATGGAGCTGCCCCCCGCCGAGCAGCAGAAGCTCTTTAA
TGAAGCCACTGCCATCGTCAGGCACCTGGAGTGGACGGACGCCGTGCAGCTGACCATGCT
GGTCATGGGCAGCGAGGCCCTGCAGCAGCAGCTCCTGGCAATGCTGGCCAACTACATCAC
CAAGGAGCTCCGGGCAGAAGTGCAGTACAACGACTAGGTCTCCGCTCGGGGCAGCGGGGG
GTCCATTTCGGTGACTCCTCCACCTTGTGGAAGGTGACCCGGGACTTGGGGGGCAGCCCA
CCCTCTCCGTATATCGCCCTAAACTGGATCGAAATCTCTCGCTGGAGAGGCGGCTGCTAT
GCTGTGTCATGTTCCAGAAATTATTTAAGGGGACGCTGTGTTTGTGGCCGCGTGCACCTT
CCACCGAGAAGCGGGTGCACCGCAAAGCTGTGCCTGCTGCCACGTGGAGGCCGTTTTCTG
AATCCCCCCACCTCGCTCACACGGAAGCTGGGGGAACAACCTCACGTTCGGCCTTCTCAT
CTTGTGAAAATGACGCCTCTCCACGCTCCCGTTGCAGGACCAGCACCTTCTTGGGGTCCA
GGGTCTCAGGACCTCAGAGCTGGCCCATGCTGGAATCATGTTTACCTCTGAATGCCCCTT
CTGGGTGGCCAGTGACTTCTGAGTGGCCTCAGGAGGGGGCAGTCGGCCTGCTGAGTGAAG
CCACAAATGTTGGTGGCACCAGCCCCTTCCCCAGTAGCTCTAGGCTCAGGCTCTTACCCT
CTCAGGACTTGGCTCTCCTTTCTGAAAAGTCACAGTCCTTCTTGAGTTCTGCTTTGTAAA
TTAAATATTTTCAGTAAAAAGGATTGCTCTTTCTGAAGTGGTAGGCTCCTAAACTATCTC
TAGGAAATGTGTCCACCCTGAATTTCCTTAATGACGTTTTTGCTTTGTTTTCAGAACCAC
AACTTGACTAAGTGTCATCAGCCTGCAATAAATGTTTTCGGAACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGCAGCGCCGCCTCCGCAGGCTGGCCACGATGCCTGTCGCCGTGGACGACATCATGAA
GCTGCTGTGCTCCATCTCCGAGCAGAGGAAAATGCAGGCGGCCGTCAAGCACTCCGGGAG
GGGTGCCCTGGTCACCGGGGCCGTGGCCTTCGTTGGTGGTTTGATGGGCGGTCCCCCAGG
ACTAGCTGTTGGGGGGGCCGTCGGGGGTCTGTTAGGTGCGTGGATGACGAGTGGACAGTT
TAAGCCCGTTCCTCAGATCATTATGGAGCTGCCCCCCGCCGAGCAGCAGAAGCTCTTTAA
TGAAGCCACTGCCATCGTCAGGCACCTGGAGTGGACGGACGCCGTGCAGCTGACCATGCT
GGTCATGGGCAGCGAGGCCCTGCAGCAGCAGCTCCTGGCAATGCTGGCCAACTACATCAC
CAAGGAGCTCCGGGCAGAAGTGCAGTACAACGACTAGGTCTCCGCTCGGGGCAGCGGGGG
GTCCATTTCGGTGACTCCTCCACCTTGTGGAAGGTGACCCGGGACTTGGGGGGCAGCCCA
CCCTCTCCGTATATCGCCCTAAACTGGATCGAAATCTCTCGCTGGAGAGGCGGCTGCTAT
GCTGTGTCATGTTCCAGAAATTATTTAAGGGGACGCTGTGTTTGTGGCCGCGTGCACCTT
CCACCGAGAAGCGGGTGCACCGCAAAGCTGTGCCTGCTGCCACGTGGAGGCCGTTTTCTG
AATCCCCCCACCTCGCTCACACGGAAGCTGGGGGAACAACCTCACGTTCGGCCTTCTCAT
CTTGTGAAAATGACGCCTCTCCACGCTCCCGTTGCAGGACCAGCACCTTCTTGGGGTCCA
GGGTCTCAGGACCTCAGAGCTGGCCCATGCTGGAATCATGTTTACCTCTGAATGCCCCTT
CTGGGTGGCCAGTGACTTCTGAGTGGCCTCAGGAGGGGGCAGTCGGCCTGCTGAGTGAAG
CCACAAATGTTGGTGGCACCAGCCCCTTCCCCAGTAGCTCTAGGCTCAGGCTCTTACCCT
CTCAGGACTTGGCTCTCCTTTCTGAAAAGTCACAGTCCTTCTTGAGTTCTGCTTTGTAAA
TTAAATATTTTCAGTAAAAAGGATTGCTCTTTCTGAAGTGGTAGGCTCCTAAACTATCTC
TAGGAAATGTGTCCACCCTGAATTTCCTTAATGACGTTTTTGCTTTGTTTTCAGAACCAC
AACTTGACTAAGTGTCATCAGCCTGCAATAAATGTTTTCGGAACAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9NSK7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NSK7_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               191-1243, gnl|bosTau2|chr18 (30188300-30189361)
               

               
               191-1243, gnl|Hg17|chr19 (34885725-34883913)
               

               
               191-1243, gnl|Mm7|chr7 (35089120-35091981)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-1243, gnl|bosTau2|chr18 (30188300-30189361)
               

               
               191-1243, gnl|Hg17|chr19 (34885725-34883913)
               

               
               191-1243, gnl|Mm7|chr7 (35089120-35091981)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cje (0.330469)
               

               
               cst (0.280073)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               cst (0.280073)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

	191-1243, gnl\|bosTau2\|chr18 (30188300-30189361)
	191-1243, gnl\|Hg17\|chr19 (34885725-34883913)
	191-1243, gnl\|Mm7\|chr7 (35089120-35091981)

	cje (0.330469)
	cst (0.280073)
	sin (0.174948)
	duo (0.172801)
	cki (0.165235)
	lnt (0.142308)
	pgl (0.118483)
	ldo (0.0970026)