Non-Coding RNA Search

Ss1.1-Mixn-0012j13.5

Sequence:


               
               CTTCTCCTCGTAGACAACGACATGGTACCAACCGCACAAATAAACTTCGTTTTGTAGTCA
TTTTTAGACACACTAGGTTGAATTTATCTCCCTGATGTTTCTTAATTGAGCCAACATTCT
TTCGGTCGGGCAGTGTCTCAGGACAGCTTTTTCAAGGCTTCGCCTGACATGATTTCCTCC
CCTTCATTAGTCACTTCGGATCCAGCCGAATTTCTCTCTCCGGTGAGAGCGGATGTGGAG
TGGCCTCCCGCAGTAGGAAGAGTAGGTGGCTCCGGTGGGGGTTGGGAAGCGGGCTGGCTT
CCTGGTCTCGAGTTTTGCAGGAGTTTCCCAGCCCCAACTAGGATCTCCGTCGAAAAAAAA
ACTTTTCACTCGTGACACCGCCCGGAATTACCGTGCGAAACTCACTTCCTGCCTTGGCGA
GCAGCAGGATCCAGCTCGGTCCAGGGGAACCCGGAAAACCAGCTCCACGCGCGTCGGGCG
GGGGAGGGCAGGGGGCGTCAGCCGAGAGCCTGGGACTCCGGGCGACCCGCGCGCCCCGAT
ATCCGACGGCAGGCGAACCTGGCCCGCGGGGGCAAAGATGCCACCGGGGCGCTGGGAGAG
CCTCGGCCGCGCTAGGCCGCCGCCGCCTCCTCGCCGCCACCCCCGGAGCCGGGCGGCGGG
GTTATTGTCTCGGTAGCGCCTGCCGCGCCCTTCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCCTCGTAGACAACGACATGGTACCAACCGCACAAATAAACTTCGTTTTGTAGTCA
TTTTTAGACACACTAGGTTGAATTTATCTCCCTGATGTTTCTTAATTGAGCCAACATTCT
TTCGGTCGGGCAGTGTCTCAGGACAGCTTTTTCAAGGCTTCGCCTGACATGATTTCCTCC
CCTTCATTAGTCACTTCGGATCCAGCCGAATTTCTCTCTCCGGTGAGAGCGGATGTGGAG
TGGCCTCCCGCAGTAGGAAGAGTAGGTGGCTCCGGTGGGGGTTGGGAAGCGGGCTGGCTT
CCTGGTCTCGAGTTTTGCAGGAGTTTCCCAGCCCCAACTAGGATCTCCGTCGAAAAAAAA
ACTTTTCACTCGTGACACCGCCCGGAATTACCGTGCGAAACTCACTTCCTGCCTTGGCGA
GCAGCAGGATCCAGCTCGGTCCAGGGGAACCCGGAAAACCAGCTCCACGCGCGTCGGGCG
GGGGAGGGCAGGGGGCGTCAGCCGAGAGCCTGGGACTCCGGGCGACCCGCGCGCCCCGAT
ATCCGACGGCAGGCGAACCTGGCCCGCGGGGGCAAAGATGCCACCGGGGCGCTGGGAGAG
CCTCGGCCGCGCTAGGCCGCCGCCGCCTCCTCGCCGCCACCCCCGGAGCCGGGCGGCGGG
GTTATTGTCTCGGTAGCGCCTGCCGCGCCCTTCGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               275-382, - strand, RNAz p=0.595786

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               275-382, - strand, RNAz p=0.595786

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               324-420, - strand, RNAmicro p=0.90253

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               324-420, - strand, RNAmicro p=0.90253

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               119-696, gnl|bosTau2|chr20 (8508598-8509178)
               

               
               119-696, gnl|Hg17|chr5 (65258390-65257803)
               

               
               119-696, gnl|Mm7|chr13 (101059377-101059896)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-696, gnl|bosTau2|chr20 (8508598-8509178)
               

               
               119-696, gnl|Hg17|chr5 (65258390-65257803)
               

               
               119-696, gnl|Mm7|chr13 (101059377-101059896)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

	119-696, gnl\|bosTau2\|chr20 (8508598-8509178)
	119-696, gnl\|Hg17\|chr5 (65258390-65257803)
	119-696, gnl\|Mm7\|chr13 (101059377-101059896)