Ss1.1-Mixn-0012j16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGCAGATGTCACTCCTCACATGTGGCTTTGGGGGGCCTCCATTAAGCCATCTTGCTC ACTAGTGGAGTCCTGGGGGCCTGTAACTCTGTGAACACTGCCTGAAGAAGCTAGAATCTT GAGTCTAGTTGTTCCTGGCTTCGTTTAGCCTAACATACCGCAACCTACAGTTTTGGCCCA TGGTTCTAAGATACCCTGATTTGAAAACTAGAGCACAGCTTTGGAGAGAGGAGAAACATC AAGTTCAGTATCTCAGTATTTTGTTTCTTACTGAAAACCACCCTTAATATCAGAGATGTT TTTTTCTATATGGAAACTTCTGAGGGGATAAGAAGGGACCTTTCACATGCTTTTTTATGA CTAAGCATCATTCTGTGGTTCTGGTGTGCATTTCTGGAAACAGATGGGTTTTGTAGAGTT GGCTTTTAAGGATGTATTTTTTCTTTTTCTTCTCTCAAATTCTGAGAGGAGGAACCTGGC TAAACTACTAGGAAGATTACAGTGTTAAATGTCTGATATCTTGTTGTGCTAAAGCATCTT TTCAAGAGTGTTATAATCCATCCCGTTTGGGATAAACTGCACACAGAGAACTCTGAAAAC AAAGGAGACAATTGAGGTCTAAAAAGAGACATATCTTAGACTGGCTCTGTCCTCTTGGCA TTTTAAAGGGGACATTTTAAAGGATTTGCATATTAGATTCTGGTTTTATCTTTTTTTTTC CATTGGATACATGATAATGTGGTTCAGGTGCAGAGTTCTTGGGCAGGAAGGATGGGATTG GACAAGGATGGGATGGGACCAGCCTACCTGGGAAACTAACCCAGTCTCTGTGTTACCTTG CCTGTTTCTTGGGGAAAAAAACAAAAACAAAAACAAAAAAAAGCGTCATCGTGGGTTGCT GTGAGTTTTATTAATATTTGTGTTGCTGGATTTATGGTTAAACGAAGCATGTAGCCGGAA GATGAACTTTTTGAGTTTTCATTTTGTCCCAGCTTTCTCCTTACAAACCTTTAAACCTTA GCCCCTGGTTGATTGATTGTGTAAATCCATTACGAGAATGTTATTTAAAGTTGTATTATA ATTGCAACCTCCACTAATTATTCAGTACTGTAGCAGCAAAGTATTATTTGTAAGAATTCA ATTATTTTTATACTTATATCCACTCTAAGTCTGGCGTTCTAGTCAGTAAAATGATGCAAT AAAATGAATACAATTTTCAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGCAGATGTCACTCCTCACATGTGGCTTTGGGGGGCCTCCATTAAGCCATCTTGCTC ACTAGTGGAGTCCTGGGGGCCTGTAACTCTGTGAACACTGCCTGAAGAAGCTAGAATCTT GAGTCTAGTTGTTCCTGGCTTCGTTTAGCCTAACATACCGCAACCTACAGTTTTGGCCCA TGGTTCTAAGATACCCTGATTTGAAAACTAGAGCACAGCTTTGGAGAGAGGAGAAACATC AAGTTCAGTATCTCAGTATTTTGTTTCTTACTGAAAACCACCCTTAATATCAGAGATGTT TTTTTCTATATGGAAACTTCTGAGGGGATAAGAAGGGACCTTTCACATGCTTTTTTATGA CTAAGCATCATTCTGTGGTTCTGGTGTGCATTTCTGGAAACAGATGGGTTTTGTAGAGTT GGCTTTTAAGGATGTATTTTTTCTTTTTCTTCTCTCAAATTCTGAGAGGAGGAACCTGGC TAAACTACTAGGAAGATTACAGTGTTAAATGTCTGATATCTTGTTGTGCTAAAGCATCTT TTCAAGAGTGTTATAATCCATCCCGTTTGGGATAAACTGCACACAGAGAACTCTGAAAAC AAAGGAGACAATTGAGGTCTAAAAAGAGACATATCTTAGACTGGCTCTGTCCTCTTGGCA TTTTAAAGGGGACATTTTAAAGGATTTGCATATTAGATTCTGGTTTTATCTTTTTTTTTC CATTGGATACATGATAATGTGGTTCAGGTGCAGAGTTCTTGGGCAGGAAGGATGGGATTG GACAAGGATGGGATGGGACCAGCCTACCTGGGAAACTAACCCAGTCTCTGTGTTACCTTG CCTGTTTCTTGGGGAAAAAAACAAAAACAAAAACAAAAAAAAGCGTCATCGTGGGTTGCT GTGAGTTTTATTAATATTTGTGTTGCTGGATTTATGGTTAAACGAAGCATGTAGCCGGAA GATGAACTTTTTGAGTTTTCATTTTGTCCCAGCTTTCTCCTTACAAACCTTTAAACCTTA GCCCCTGGTTGATTGATTGTGTAAATCCATTACGAGAATGTTATTTAAAGTTGTATTATA ATTGCAACCTCCACTAATTATTCAGTACTGTAGCAGCAAAGTATTATTTGTAAGAATTCA ATTATTTTTATACTTATATCCACTCTAAGTCTGGCGTTCTAGTCAGTAAAATGATGCAAT AAAATGAATACAATTTTCAAAAAAAAAAAAAAAAAA |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 152-451, gnl|bosTau2|chr1 (38118990-38119287) | |
| 152-451, gnl|Hg17|chr3 (126168265-126167978) | |
| 152-451, gnl|Mm7|chr16 (33444849-33445278) | |
| 490-850, gnl|bosTau2|chr1 (38119296-38119666) | |
| 490-850, gnl|Hg17|chr3 (126167969-126167592) | |
| 490-850, gnl|Mm7|chr16 (33445365-33445747) | |
| 886-1219, gnl|bosTau2|chr1 (38119677-38120008) | |
| 886-1219, gnl|canFam2|chr33 (31022795-31023054) | |
| 886-1219, gnl|dasNov1|scaffold_79782 (5875-5617) | |
| 886-1219, gnl|echTel1|scaffold_244972 (920-1161) | |
| 886-1219, gnl|galGal2|chr7 (28636726-28637018) | |
| 886-1219, gnl|hg17|chr3 (126167226-126167485) | |
| 886-1219, gnl|Hg17|chr3 (126167574-126167244) | |
| 886-1219, gnl|loxAfr1|scaffold_13704 (56764-56504) | |
| 886-1219, gnl|mm7|chr16 (33446091-33445836) | |
| 886-1219, gnl|Mm7|chr16 (33445758-33446075) | |
| 886-1219, gnl|monDom2|scaffold_24 (23873222-23873477) | |
| 886-1219, gnl|oryCun1|scaffold_201491 (177018-177274) | |
| 886-1219, gnl|panTro1|chr2 (127997656-127997915) | |
| 886-1219, gnl|rheMac2|chr2 (44949047-44949306) | |
| 886-1219, gnl|rn3|chr11 (68881583-68881847) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 152-451, gnl|bosTau2|chr1 (38118990-38119287) | |
| 152-451, gnl|Hg17|chr3 (126168265-126167978) | |
| 152-451, gnl|Mm7|chr16 (33444849-33445278) | |
| 490-850, gnl|bosTau2|chr1 (38119296-38119666) | |
| 490-850, gnl|Hg17|chr3 (126167969-126167592) | |
| 490-850, gnl|Mm7|chr16 (33445365-33445747) | |
| 886-1219, gnl|bosTau2|chr1 (38119677-38120008) | |
| 886-1219, gnl|canFam2|chr33 (31022795-31023054) | |
| 886-1219, gnl|dasNov1|scaffold_79782 (5875-5617) | |
| 886-1219, gnl|echTel1|scaffold_244972 (920-1161) | |
| 886-1219, gnl|galGal2|chr7 (28636726-28637018) | |
| 886-1219, gnl|hg17|chr3 (126167226-126167485) | |
| 886-1219, gnl|Hg17|chr3 (126167574-126167244) | |
| 886-1219, gnl|loxAfr1|scaffold_13704 (56764-56504) | |
| 886-1219, gnl|mm7|chr16 (33446091-33445836) | |
| 886-1219, gnl|Mm7|chr16 (33445758-33446075) | |
| 886-1219, gnl|monDom2|scaffold_24 (23873222-23873477) | |
| 886-1219, gnl|oryCun1|scaffold_201491 (177018-177274) | |
| 886-1219, gnl|panTro1|chr2 (127997656-127997915) | |
| 886-1219, gnl|rheMac2|chr2 (44949047-44949306) | |
| 886-1219, gnl|rn3|chr11 (68881583-68881847) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| isp (0.601504) | |
| liv (0.438853) | |
| elu (0.385356) | |
| tbr (0.308356) | |
| pty (0.285429) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (0.601504) | |
| liv (0.438853) | |
| elu (0.385356) | |
| tbr (0.308356) | |
| pty (0.285429) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) |