Non-Coding RNA Search

Ss1.1-Mixn-0012k18.5

Sequence:


               
               AGGACACGGTGCTGCTGCTCAACCCCACCGTGGGGGACCGGCTGGCGGTGAGCAGCACGG
ACCAGCTGCTGAGCGCCTACACCCCGCCTGCCGAGCCTGCTGCGCAGCCCGCGCAGTGGC
TGGAAGCCTCAGAGGAGGAGCGTCGGGGGGGCCTGCGGCTGCGTGTCTGCCACGGCAAGC
CAGTGACGCAGGTGACCTGGCATGGGCGTGGGGACTACCTGGCCGTGGTGCTGGCCACCA
CGGGCCACACCCAGGTGCTGATCCACCAGTTGAGCCGGCGTCGCAGCCAGAGTCCCTTCC
GCCGCAGCCACGGTCAGGTGCAGCGCGTGGCCTTCCACCCCGTGCGGCCCTTCCTGCTCG
TGGCCTCCCAGCGCAGCGTCCGCCTTTACCACCTGCTGCGCCAGGAGCTCACCAAGAAGC
TGCTGCCCAACTGCAAGTGGGTGTCCAGCCTGGCAGTGCACCCTGCAGGTGACAACGTTA
TCTGTGGCAGCTATGATAGCAAGCTGGTGTGGTTTGACCTGGATCTCTCTACCAAGCCAT
ACCGAGTGCTGAGGCACCACAAGAAGGCCCTGCGGGCTGTGGCCTTCCACCCCCGGTACC
CGCTCTTTGCATCTGGCTCCGACGACGGCAGTGTCATCGTCTGCCACGGAATGGTGTACA
ACGACTTGCTGCAGAACCCGCTGCTGGTGCCCGTGAAGGTGCTGAAGGGGCACGCTCTGA
CCCGAGACCTGGGGGTGCTGGACGTGGCCTTCCACCCCACCCAGCCCTGGGTCTTCTCCG
CCGGCGCCGACGGCACGGTCCGCCTCTTCTCCTAGGCGGCCCGCTTCCGGGGCCGCGCCT
GTGCTCCGGACCCTCAATAGAGGCCTTTTCCCTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACACGGTGCTGCTGCTCAACCCCACCGTGGGGGACCGGCTGGCGGTGAGCAGCACGG
ACCAGCTGCTGAGCGCCTACACCCCGCCTGCCGAGCCTGCTGCGCAGCCCGCGCAGTGGC
TGGAAGCCTCAGAGGAGGAGCGTCGGGGGGGCCTGCGGCTGCGTGTCTGCCACGGCAAGC
CAGTGACGCAGGTGACCTGGCATGGGCGTGGGGACTACCTGGCCGTGGTGCTGGCCACCA
CGGGCCACACCCAGGTGCTGATCCACCAGTTGAGCCGGCGTCGCAGCCAGAGTCCCTTCC
GCCGCAGCCACGGTCAGGTGCAGCGCGTGGCCTTCCACCCCGTGCGGCCCTTCCTGCTCG
TGGCCTCCCAGCGCAGCGTCCGCCTTTACCACCTGCTGCGCCAGGAGCTCACCAAGAAGC
TGCTGCCCAACTGCAAGTGGGTGTCCAGCCTGGCAGTGCACCCTGCAGGTGACAACGTTA
TCTGTGGCAGCTATGATAGCAAGCTGGTGTGGTTTGACCTGGATCTCTCTACCAAGCCAT
ACCGAGTGCTGAGGCACCACAAGAAGGCCCTGCGGGCTGTGGCCTTCCACCCCCGGTACC
CGCTCTTTGCATCTGGCTCCGACGACGGCAGTGTCATCGTCTGCCACGGAATGGTGTACA
ACGACTTGCTGCAGAACCCGCTGCTGGTGCCCGTGAAGGTGCTGAAGGGGCACGCTCTGA
CCCGAGACCTGGGGGTGCTGGACGTGGCCTTCCACCCCACCCAGCCCTGGGTCTTCTCCG
CCGGCGCCGACGGCACGGTCCGCCTCTTCTCCTAGGCGGCCCGCTTCCGGGGCCGCGCCT
GTGCTCCGGACCCTCAATAGAGGCCTTTTCCCTGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|49522869|gb|AAH73813.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49522869|gb|AAH73813.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               178-470, - strand, RNAz p=0.909793

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-470, - strand, RNAz p=0.909793

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               178-470, gnl|bosTau2|chr14 (54515-54807)
               

               
               178-470, gnl|canFam2|chr13 (40729841-40730160)
               

               
               178-470, gnl|danRer3|chr19 (65408583-65408894)
               

               
               178-470, gnl|fr1|chrUn (39600158-39599847)
               

               
               178-470, gnl|hg17|chr8 (145389729-145390047)
               

               
               178-470, gnl|Hg17|chr8 (145457940-145457648)
               

               
               178-470, gnl|mm7|chr15 (76536362-76536673)
               

               
               178-470, gnl|Mm7|chr15 (76536660-76536368)
               

               
               178-470, gnl|monDom2|scaffold_79 (2741416-2741774)
               

               
               178-470, gnl|oryCun1|scaffold_182729 (43369-43689)
               

               
               178-470, gnl|rheMac2|chr8 (146884103-146884424)
               

               
               178-470, gnl|rn3|chr7 (114535237-114535548)
               

               
               178-470, gnl|tetNig1|chrUn_random (10322024-10322344)
               

               
               178-470, gnl|xenTro1|scaffold_2227 (7059-7440)
               


               
               658-843, gnl|bosTau2|chr14 (55221-55406)
               

               
               658-843, gnl|Hg17|chr8 (145457085-145456898)
               

               
               658-843, gnl|Mm7|chr15 (76535935-76535748)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-470, gnl|bosTau2|chr14 (54515-54807)
               

               
               178-470, gnl|canFam2|chr13 (40729841-40730160)
               

               
               178-470, gnl|danRer3|chr19 (65408583-65408894)
               

               
               178-470, gnl|fr1|chrUn (39600158-39599847)
               

               
               178-470, gnl|hg17|chr8 (145389729-145390047)
               

               
               178-470, gnl|Hg17|chr8 (145457940-145457648)
               

               
               178-470, gnl|mm7|chr15 (76536362-76536673)
               

               
               178-470, gnl|Mm7|chr15 (76536660-76536368)
               

               
               178-470, gnl|monDom2|scaffold_79 (2741416-2741774)
               

               
               178-470, gnl|oryCun1|scaffold_182729 (43369-43689)
               

               
               178-470, gnl|rheMac2|chr8 (146884103-146884424)
               

               
               178-470, gnl|rn3|chr7 (114535237-114535548)
               

               
               178-470, gnl|tetNig1|chrUn_random (10322024-10322344)
               

               
               178-470, gnl|xenTro1|scaffold_2227 (7059-7440)
               


               
               658-843, gnl|bosTau2|chr14 (55221-55406)
               

               
               658-843, gnl|Hg17|chr8 (145457085-145456898)
               

               
               658-843, gnl|Mm7|chr15 (76535935-76535748)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	178-470, gnl\|bosTau2\|chr14 (54515-54807)
	178-470, gnl\|canFam2\|chr13 (40729841-40730160)
	178-470, gnl\|danRer3\|chr19 (65408583-65408894)
	178-470, gnl\|fr1\|chrUn (39600158-39599847)
	178-470, gnl\|hg17\|chr8 (145389729-145390047)
	178-470, gnl\|Hg17\|chr8 (145457940-145457648)
	178-470, gnl\|mm7\|chr15 (76536362-76536673)
	178-470, gnl\|Mm7\|chr15 (76536660-76536368)
	178-470, gnl\|monDom2\|scaffold_79 (2741416-2741774)
	178-470, gnl\|oryCun1\|scaffold_182729 (43369-43689)
	178-470, gnl\|rheMac2\|chr8 (146884103-146884424)
	178-470, gnl\|rn3\|chr7 (114535237-114535548)
	178-470, gnl\|tetNig1\|chrUn_random (10322024-10322344)
	178-470, gnl\|xenTro1\|scaffold_2227 (7059-7440)

	658-843, gnl\|bosTau2\|chr14 (55221-55406)
	658-843, gnl\|Hg17\|chr8 (145457085-145456898)
	658-843, gnl\|Mm7\|chr15 (76535935-76535748)

	fbs (0.175346)
	nje (0.16592)
	pty (0.142714)
	cly (0.120642)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)