Non-Coding RNA Search

Ss1.1-Mixn-0012l03.5

Sequence:


               
               GTGGAGGGTCGCGGCGGCCGCCTGTGGGCGCTCACAGCCCCGGAGCCCACCCTGCTGGGC
GGCGCGGGGCCCCCGCCGCGGCGCATCCGCGTGGACCTGGACTGGGAGCGGGGCCGCGTG
GCCTTCTACGACGGCCACTCCCTCGACTTGCTCTTCGCCTTCCAGGGCCCCGGCCCCCTG
GGGGAGCGCGTCTTCCCGCTGCTGTGCACCCGCGACCCCCGCGCCCCTCTCCGCATCGTG
CCCGCAGAAGGCTGAGAAGCTCGCCCGCAACCCCCATTCTGGTTTGGCCCGAATCAAGGC
ATGGAAATCCTTACTCGTTCCAGGGGTCAAGTCCACGCCCCTTGTGGGAGAACTGATAAG
CAACCCCCGCCCACTTATGTTGCCTCTCTTCTCCCAAACAGTTAGGAGGACCTCGACCGG
CCTCCCATTTTACACCCAAAGCCGAATCCACCCCAGCCCTCTCCTTAGGATGCCTCTCCC
TGAAGGCTACCCCAGTACCTCCCGACGGATCCCCCGACCCCTTCTATCTTATTCCACCCA
GGCCTGAAGTGGGGAACAGGCTCTGCAAACGGCCCATACACAGAGGCCCCGCCCGGCAAA
TATTTACCTCCCATTCTTGCCTCTCCTCTCGGCAAAGAAGGGCCAGTGCCCTCTCCACAG
CTCTGAGGCTGGGCTTCCCTGCCTCATTCATTCTGAGGCTTCTCACCTACCCACAACAAG
AGGCTTGACTCTGGCCTCGGCCTTCGGCCCCTCTCAGAAGCTTACTACTCCCTTTTGGGG
AGAGAGGGGCAGGCCAGGTCTATTCCACCATGATGACTTTGTATGCTTACAGCCTCTTCC
CCACTAAGAACCTTCTTAAAACTTCCTCCTGGACCTACTTACAACAAGGAACCAATGGTG
CTACCTCTCCTTTGTCAACCTGGAAACGGCTCCCCGACATCCCTGATTCACCCTTGTATA
TAGTCCCACATCTTTCCCCATATGTATAAATGGGCCCGTATTTAACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGAGGGTCGCGGCGGCCGCCTGTGGGCGCTCACAGCCCCGGAGCCCACCCTGCTGGGC
GGCGCGGGGCCCCCGCCGCGGCGCATCCGCGTGGACCTGGACTGGGAGCGGGGCCGCGTG
GCCTTCTACGACGGCCACTCCCTCGACTTGCTCTTCGCCTTCCAGGGCCCCGGCCCCCTG
GGGGAGCGCGTCTTCCCGCTGCTGTGCACCCGCGACCCCCGCGCCCCTCTCCGCATCGTG
CCCGCAGAAGGCTGAGAAGCTCGCCCGCAACCCCCATTCTGGTTTGGCCCGAATCAAGGC
ATGGAAATCCTTACTCGTTCCAGGGGTCAAGTCCACGCCCCTTGTGGGAGAACTGATAAG
CAACCCCCGCCCACTTATGTTGCCTCTCTTCTCCCAAACAGTTAGGAGGACCTCGACCGG
CCTCCCATTTTACACCCAAAGCCGAATCCACCCCAGCCCTCTCCTTAGGATGCCTCTCCC
TGAAGGCTACCCCAGTACCTCCCGACGGATCCCCCGACCCCTTCTATCTTATTCCACCCA
GGCCTGAAGTGGGGAACAGGCTCTGCAAACGGCCCATACACAGAGGCCCCGCCCGGCAAA
TATTTACCTCCCATTCTTGCCTCTCCTCTCGGCAAAGAAGGGCCAGTGCCCTCTCCACAG
CTCTGAGGCTGGGCTTCCCTGCCTCATTCATTCTGAGGCTTCTCACCTACCCACAACAAG
AGGCTTGACTCTGGCCTCGGCCTTCGGCCCCTCTCAGAAGCTTACTACTCCCTTTTGGGG
AGAGAGGGGCAGGCCAGGTCTATTCCACCATGATGACTTTGTATGCTTACAGCCTCTTCC
CCACTAAGAACCTTCTTAAAACTTCCTCCTGGACCTACTTACAACAAGGAACCAATGGTG
CTACCTCTCCTTTGTCAACCTGGAAACGGCTCCCCGACATCCCTGATTCACCCTTGTATA
TAGTCCCACATCTTTCCCCATATGTATAAATGGGCCCGTATTTAACAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               616-723, - strand, RNAz p=0.985149

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               616-723, - strand, RNAz p=0.985149

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-859, gnl|bosTau2|chr23 (23992155-23993027)
               

               
               1-859, gnl|Hg17|chr6 (30147121-30146246)
               

               
               1-859, gnl|Mm7|chr17 (35098922-35099759)
               


               
               873-1008, gnl|bosTau2|chr23 (23993079-23993215)
               

               
               873-1008, gnl|canFam2|chr35 (29310927-29311097)
               

               
               873-1008, gnl|echTel1|scaffold_185769 (1378-1221)
               

               
               873-1008, gnl|hg17|chr6 (30146091-30146270)
               

               
               873-1008, gnl|Hg17|chr6 (30146231-30146091)
               

               
               873-1008, gnl|loxAfr1|scaffold_6025 (37660-37817)
               

               
               873-1008, gnl|mm7|chr17 (35099892-35099736)
               

               
               873-1008, gnl|Mm7|chr17 (35099773-35099890)
               

               
               873-1008, gnl|monDom2|scaffold_42 (19168267-19168106)
               

               
               873-1008, gnl|oryCun1|scaffold_213232 (187294-187126)
               

               
               873-1008, gnl|panTro1|chr5 (30633512-30633691)
               

               
               873-1008, gnl|rheMac2|chr4 (29659009-29659186)
               

               
               873-1008, gnl|rn3|chr20 (1697590-1697744)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-859, gnl|bosTau2|chr23 (23992155-23993027)
               

               
               1-859, gnl|Hg17|chr6 (30147121-30146246)
               

               
               1-859, gnl|Mm7|chr17 (35098922-35099759)
               


               
               873-1008, gnl|bosTau2|chr23 (23993079-23993215)
               

               
               873-1008, gnl|canFam2|chr35 (29310927-29311097)
               

               
               873-1008, gnl|echTel1|scaffold_185769 (1378-1221)
               

               
               873-1008, gnl|hg17|chr6 (30146091-30146270)
               

               
               873-1008, gnl|Hg17|chr6 (30146231-30146091)
               

               
               873-1008, gnl|loxAfr1|scaffold_6025 (37660-37817)
               

               
               873-1008, gnl|mm7|chr17 (35099892-35099736)
               

               
               873-1008, gnl|Mm7|chr17 (35099773-35099890)
               

               
               873-1008, gnl|monDom2|scaffold_42 (19168267-19168106)
               

               
               873-1008, gnl|oryCun1|scaffold_213232 (187294-187126)
               

               
               873-1008, gnl|panTro1|chr5 (30633512-30633691)
               

               
               873-1008, gnl|rheMac2|chr4 (29659009-29659186)
               

               
               873-1008, gnl|rn3|chr20 (1697590-1697744)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               col (0.195008)
               

               
               ton (0.1755)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)

	1-859, gnl\|bosTau2\|chr23 (23992155-23993027)
	1-859, gnl\|Hg17\|chr6 (30147121-30146246)
	1-859, gnl\|Mm7\|chr17 (35098922-35099759)

	873-1008, gnl\|bosTau2\|chr23 (23993079-23993215)
	873-1008, gnl\|canFam2\|chr35 (29310927-29311097)
	873-1008, gnl\|echTel1\|scaffold_185769 (1378-1221)
	873-1008, gnl\|hg17\|chr6 (30146091-30146270)
	873-1008, gnl\|Hg17\|chr6 (30146231-30146091)
	873-1008, gnl\|loxAfr1\|scaffold_6025 (37660-37817)
	873-1008, gnl\|mm7\|chr17 (35099892-35099736)
	873-1008, gnl\|Mm7\|chr17 (35099773-35099890)
	873-1008, gnl\|monDom2\|scaffold_42 (19168267-19168106)
	873-1008, gnl\|oryCun1\|scaffold_213232 (187294-187126)
	873-1008, gnl\|panTro1\|chr5 (30633512-30633691)
	873-1008, gnl\|rheMac2\|chr4 (29659009-29659186)
	873-1008, gnl\|rn3\|chr20 (1697590-1697744)

	col (0.195008)
	ton (0.1755)
	pty (0.142714)
	lnt (0.142308)
	bla (0.124347)