Ss1.1-Mixn-0012l16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGNCCAGCAACTCGGCCCGGCAGTCCCGGAGCTCCGCCTCCTGCAGGTGTGCCAGGCAG ATGAGGGTGGCCTTGCTGATGTAGCTCTGCTGTGCCAGGGGCGTGTGGCGGATGGCGCTG CTGCTGCCCCATGTCTCCAGGAGCTCCTTCAGCGCCTGCATGAGGAGCGGGCGTCGCTGG CTGTCCTCGGCCAGGTACCCCAGCAGGCTCTGCAGCACAGGTGTCGTGCAGCTGAACCGG AGGAGCAGCAGCTTCCGGGTCATCACAAACTGGGCCTTCTTGCTCTTGGTCACCAGGTTC CCCAGCAGCCGCGAGAGGACGCGAGGCCCTGGGGCGGCCTCCACCAGCCCGGTCAGCACG GCCTCCATGGCCCGGTCGGGCACACGCTCCACCAGGCGCCAGCAGACCCGCTGCCACAGG CAGTGGCCCTGGGTGAGCGCCATCAGTCGGGGCACCAGCGCACCCAGGATCTCCTTCTGT CTCCCGAGGATGCAGGCCTTCCCGAGGACCTGAGACAGGAAGGACACAGAGCAGTCCGAG CCACCTCGGAGCGAGTCCACCACCCCCTGCAGCACCCGCAGGACCTCCTTGCCCAGCAGC AGGAAGTAGTTCTGCGGGAGGAACTCGGCCAGGTTCTCCTGCTGCAGGCGGTTGCCCAGG TGATCGGGCAAGCTCACCACCTTGGCGAGGAGCGTGGCCTGGAGCAGGGGGAAGGCCGGC CTCTGCCTGCTGCCGACACTGCCCCTCCAACACANGGCCAGCGGCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGNCCAGCAACTCGGCCCGGCAGTCCCGGAGCTCCGCCTCCTGCAGGTGTGCCAGGCAG ATGAGGGTGGCCTTGCTGATGTAGCTCTGCTGTGCCAGGGGCGTGTGGCGGATGGCGCTG CTGCTGCCCCATGTCTCCAGGAGCTCCTTCAGCGCCTGCATGAGGAGCGGGCGTCGCTGG CTGTCCTCGGCCAGGTACCCCAGCAGGCTCTGCAGCACAGGTGTCGTGCAGCTGAACCGG AGGAGCAGCAGCTTCCGGGTCATCACAAACTGGGCCTTCTTGCTCTTGGTCACCAGGTTC CCCAGCAGCCGCGAGAGGACGCGAGGCCCTGGGGCGGCCTCCACCAGCCCGGTCAGCACG GCCTCCATGGCCCGGTCGGGCACACGCTCCACCAGGCGCCAGCAGACCCGCTGCCACAGG CAGTGGCCCTGGGTGAGCGCCATCAGTCGGGGCACCAGCGCACCCAGGATCTCCTTCTGT CTCCCGAGGATGCAGGCCTTCCCGAGGACCTGAGACAGGAAGGACACAGAGCAGTCCGAG CCACCTCGGAGCGAGTCCACCACCCCCTGCAGCACCCGCAGGACCTCCTTGCCCAGCAGC AGGAAGTAGTTCTGCGGGAGGAACTCGGCCAGGTTCTCCTGCTGCAGGCGGTTGCCCAGG TGATCGGGCAAGCTCACCACCTTGGCGAGGAGCGTGGCCTGGAGCAGGGGGAAGGCCGGC CTCTGCCTGCTGCCGACACTGCCCCTCCAACACANGGCCAGCGGCCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 542-700, - strand, RNAz p=0.747581 | |
| 621-739, - strand, RNAz p=0.662671 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 542-700, - strand, RNAz p=0.747581 | |
| 621-739, - strand, RNAz p=0.662671 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 14-158, gnl|bosTau2|chr25 (2761695-2761839) | |
| 14-158, gnl|canFam2|chr6 (42356533-42356355) | |
| 14-158, gnl|danRer3|chr24 (32549334-32549484) | |
| 14-158, gnl|fr1|chrUn (22085900-22085727) | |
| 14-158, gnl|hg17|chr16 (1490344-1490521) | |
| 14-158, gnl|Hg17|chr16 (1490490-1490347) | |
| 14-158, gnl|loxAfr1|scaffold_54862 (9624-9441) | |
| 14-158, gnl|mm7|chr17 (23290229-23290048) | |
| 14-158, gnl|Mm7|chr17 (23290080-23290224) | |
| 14-158, gnl|monDom2|scaffold_5 (122502057-122501897) | |
| 14-158, gnl|oryCun1|scaffold_198027 (6860-7039) | |
| 14-158, gnl|rheMac2|chr20 (1486465-1486643) | |
| 14-158, gnl|rn3|chr10 (14355743-14355562) | |
| 14-158, gnl|tetNig1|chr2 (4873430-4873582) | |
| 327-475, gnl|bosTau2|chr25 (2763046-2763194) | |
| 327-475, gnl|canFam2|chr6 (42357566-42357376) | |
| 327-475, gnl|danRer3|chr24 (32546295-32546458) | |
| 327-475, gnl|echTel1|scaffold_294268 (713-523) | |
| 327-475, gnl|fr1|chrUn (22086458-22086307) | |
| 327-475, gnl|hg17|chr16 (1487332-1487527) | |
| 327-475, gnl|Hg17|chr16 (1487511-1487363) | |
| 327-475, gnl|loxAfr1|scaffold_54862 (11179-10989) | |
| 327-475, gnl|mm7|chr17 (23293976-23293789) | |
| 327-475, gnl|Mm7|chr17 (23293797-23293945) | |
| 327-475, gnl|monDom2|scaffold_5 (122505935-122505764) | |
| 327-475, gnl|oryCun1|scaffold_198027 (5083-5272) | |
| 327-475, gnl|rheMac2|chr20 (1483067-1483262) | |
| 327-475, gnl|rn3|chr10 (14359464-14359277) | |
| 327-475, gnl|tetNig1|chr2 (4872878-4873038) | |
| 542-760, gnl|bosTau2|chr25 (2764879-2765097) | |
| 542-760, gnl|canFam2|chr6 (42359442-42359253) | |
| 542-760, gnl|echTel1|scaffold_111382 (842-654) | |
| 542-760, gnl|fr1|chrUn (22086981-22086792) | |
| 542-760, gnl|hg17|chr16 (1485389-1485578) | |
| 542-760, gnl|Hg17|chr16 (1485628-1485410) | |
| 542-760, gnl|mm7|chr17 (23296309-23296120) | |
| 542-760, gnl|Mm7|chr17 (23296068-23296286) | |
| 542-760, gnl|monDom2|scaffold_5 (122516262-122516073) | |
| 542-760, gnl|oryCun1|scaffold_198027 (3720-3909) | |
| 542-760, gnl|panTro1|chr18 (1559455-1559644) | |
| 542-760, gnl|rheMac2|chr20 (1480863-1481052) | |
| 542-760, gnl|rn3|chr10 (14361590-14361401) | |
| 542-760, gnl|tetNig1|chr2 (4872379-4872568) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-158, gnl|bosTau2|chr25 (2761695-2761839) | |
| 14-158, gnl|canFam2|chr6 (42356533-42356355) | |
| 14-158, gnl|danRer3|chr24 (32549334-32549484) | |
| 14-158, gnl|fr1|chrUn (22085900-22085727) | |
| 14-158, gnl|hg17|chr16 (1490344-1490521) | |
| 14-158, gnl|Hg17|chr16 (1490490-1490347) | |
| 14-158, gnl|loxAfr1|scaffold_54862 (9624-9441) | |
| 14-158, gnl|mm7|chr17 (23290229-23290048) | |
| 14-158, gnl|Mm7|chr17 (23290080-23290224) | |
| 14-158, gnl|monDom2|scaffold_5 (122502057-122501897) | |
| 14-158, gnl|oryCun1|scaffold_198027 (6860-7039) | |
| 14-158, gnl|rheMac2|chr20 (1486465-1486643) | |
| 14-158, gnl|rn3|chr10 (14355743-14355562) | |
| 14-158, gnl|tetNig1|chr2 (4873430-4873582) | |
| 327-475, gnl|bosTau2|chr25 (2763046-2763194) | |
| 327-475, gnl|canFam2|chr6 (42357566-42357376) | |
| 327-475, gnl|danRer3|chr24 (32546295-32546458) | |
| 327-475, gnl|echTel1|scaffold_294268 (713-523) | |
| 327-475, gnl|fr1|chrUn (22086458-22086307) | |
| 327-475, gnl|hg17|chr16 (1487332-1487527) | |
| 327-475, gnl|Hg17|chr16 (1487511-1487363) | |
| 327-475, gnl|loxAfr1|scaffold_54862 (11179-10989) | |
| 327-475, gnl|mm7|chr17 (23293976-23293789) | |
| 327-475, gnl|Mm7|chr17 (23293797-23293945) | |
| 327-475, gnl|monDom2|scaffold_5 (122505935-122505764) | |
| 327-475, gnl|oryCun1|scaffold_198027 (5083-5272) | |
| 327-475, gnl|rheMac2|chr20 (1483067-1483262) | |
| 327-475, gnl|rn3|chr10 (14359464-14359277) | |
| 327-475, gnl|tetNig1|chr2 (4872878-4873038) | |
| 542-760, gnl|bosTau2|chr25 (2764879-2765097) | |
| 542-760, gnl|canFam2|chr6 (42359442-42359253) | |
| 542-760, gnl|echTel1|scaffold_111382 (842-654) | |
| 542-760, gnl|fr1|chrUn (22086981-22086792) | |
| 542-760, gnl|hg17|chr16 (1485389-1485578) | |
| 542-760, gnl|Hg17|chr16 (1485628-1485410) | |
| 542-760, gnl|mm7|chr17 (23296309-23296120) | |
| 542-760, gnl|Mm7|chr17 (23296068-23296286) | |
| 542-760, gnl|monDom2|scaffold_5 (122516262-122516073) | |
| 542-760, gnl|oryCun1|scaffold_198027 (3720-3909) | |
| 542-760, gnl|panTro1|chr18 (1559455-1559644) | |
| 542-760, gnl|rheMac2|chr20 (1480863-1481052) | |
| 542-760, gnl|rn3|chr10 (14361590-14361401) | |
| 542-760, gnl|tetNig1|chr2 (4872379-4872568) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |