Ss1.1-Mixn-0012m11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCGTTGGAGCGGCCGCAGACCCTCGGGGCGGAGGGACGGAGACAGCGCCAGTTCTGGC CGCCGTGGGAACGATGGCAGACGATCAAGACTGTGTCGTCCAGCAGGGGGCTGGGGACTC AGAAAGCAGAGATACGGTTGATGCGAAGCCAGACCGGTCCTCTTTTGTCCAGTCACTCTT CAATAAGAAGAAGAAAAGTGGCTCAGGGAGCTCAGTCAAGATCCCCCGGGACCGAGAGCC TACGTTTCAGTATAACATGGATTTTGAGAAAGTGGGCAAATGCATCATCATTAACAACAA GAACTTCGACAGAATGACAGGAATGGGTGTCCGCAACGGGACAGACAAAGATGCGGAGGC TCTTTTCAAGTGCTTCCGAAGCCTGGGTTTCGATGTGACCGTCTATAACGACTGCTCTTG TGCCAAGATGCAAGATCTGCTGAAAAAAGCTTCTGAGGAGGACCACCGAAATTCAGCCTG CTTCGCCTGCATCTTATTAAGCCACGGAGAAGAAAATTTCATTTATGGAACAGATGGTGT GACAGCAATAAAGGACCTGACGGTGCATTTTAGGGGGGATCGGTGCAAGACCCTTTTAGA GAAACCCAAACTCTTCTTCATTCAGGCTTGCCGGGGCACGGAGCTCGATGACGGGATCCA GGCAGACTCGGGGCCTATCAATGACACAGATGCTAATCCCCGGTATAAGATCCCAGTTGA AGCCGACTTTCTCTTCGCCTATTCCACAGTTCCAGGCTATTACTCATGGAGGAGCCCGGG GAGTGGCTCCTGGTTTGTGCAGGCCCTCTGCTCCATCCTGAACGAGCACGGGAAAAGCCT GGAGATCTTGCAGATCCTCACCAGGGTGAATGACCGGGTGGCCAGGCACTTTGAATCCCA GTCTGACGACCCTCGGTTCCACGAGAAGAAGCAGATCCCCTGTGTGGTTTCCATGCTCAC CAAGGAACTCTACTTCTGAAGATGACCGTTTCAGGGGCGCATTCTAGCTGAGAGGTTACG GATCACTGGTTGATGAATCAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCGTTGGAGCGGCCGCAGACCCTCGGGGCGGAGGGACGGAGACAGCGCCAGTTCTGGC CGCCGTGGGAACGATGGCAGACGATCAAGACTGTGTCGTCCAGCAGGGGGCTGGGGACTC AGAAAGCAGAGATACGGTTGATGCGAAGCCAGACCGGTCCTCTTTTGTCCAGTCACTCTT CAATAAGAAGAAGAAAAGTGGCTCAGGGAGCTCAGTCAAGATCCCCCGGGACCGAGAGCC TACGTTTCAGTATAACATGGATTTTGAGAAAGTGGGCAAATGCATCATCATTAACAACAA GAACTTCGACAGAATGACAGGAATGGGTGTCCGCAACGGGACAGACAAAGATGCGGAGGC TCTTTTCAAGTGCTTCCGAAGCCTGGGTTTCGATGTGACCGTCTATAACGACTGCTCTTG TGCCAAGATGCAAGATCTGCTGAAAAAAGCTTCTGAGGAGGACCACCGAAATTCAGCCTG CTTCGCCTGCATCTTATTAAGCCACGGAGAAGAAAATTTCATTTATGGAACAGATGGTGT GACAGCAATAAAGGACCTGACGGTGCATTTTAGGGGGGATCGGTGCAAGACCCTTTTAGA GAAACCCAAACTCTTCTTCATTCAGGCTTGCCGGGGCACGGAGCTCGATGACGGGATCCA GGCAGACTCGGGGCCTATCAATGACACAGATGCTAATCCCCGGTATAAGATCCCAGTTGA AGCCGACTTTCTCTTCGCCTATTCCACAGTTCCAGGCTATTACTCATGGAGGAGCCCGGG GAGTGGCTCCTGGTTTGTGCAGGCCCTCTGCTCCATCCTGAACGAGCACGGGAAAAGCCT GGAGATCTTGCAGATCCTCACCAGGGTGAATGACCGGGTGGCCAGGCACTTTGAATCCCA GTCTGACGACCCTCGGTTCCACGAGAAGAAGCAGATCCCCTGTGTGGTTTCCATGCTCAC CAAGGAACTCTACTTCTGAAGATGACCGTTTCAGGGGCGCATTCTAGCTGAGAGGTTACG GATCACTGGTTGATGAATCAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 759-878, + strand, RNAz p=0.807004 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 759-878, + strand, RNAz p=0.807004 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_033340, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 181-329, gnl|bosTau2|chr26 (22851186-22851040) | |
| 181-329, gnl|canFam2|chr28 (27623045-27623197) | |
| 181-329, gnl|danRer3|chr23 (32915742-32915896) | |
| 181-329, gnl|dasNov1|scaffold_1703 (160046-160186) | |
| 181-329, gnl|echTel1|scaffold_286426 (73946-73788) | |
| 181-329, gnl|fr1|chrUn (213623714-213623551) | |
| 181-329, gnl|galGal2|chr6 (26575728-26575863) | |
| 181-329, gnl|hg17|chr10 (115470774-115470926) | |
| 181-329, gnl|Hg17|chr10 (115470778-115470924) | |
| 181-329, gnl|loxAfr1|scaffold_198170 (961-806) | |
| 181-329, gnl|mm7|chr19 (56348210-56348362) | |
| 181-329, gnl|Mm7|chr19 (56348214-56348360) | |
| 181-329, gnl|monDom2|scaffold_14 (48498471-48498307) | |
| 181-329, gnl|oryCun1|scaffold_211247 (28961-29113) | |
| 181-329, gnl|panTro1|chr8 (117624890-117625042) | |
| 181-329, gnl|rheMac2|chr9 (113383343-113383495) | |
| 181-329, gnl|rn3|chr1 (262923120-262923272) | |
| 181-329, gnl|tetNig1|chr2 (6368926-6368763) | |
| 181-329, gnl|xenTro1|scaffold_1811 (41309-41465) | |
| 448-626, gnl|bosTau2|chr26 (22847551-22847373) | |
| 448-626, gnl|Hg17|chr10 (115475109-115475287) | |
| 448-626, gnl|Mm7|chr19 (56351200-56351378) | |
| 721-1044, gnl|bosTau2|chr26 (22844109-22843784) | |
| 721-1044, gnl|Hg17|chr10 (115479024-115479346) | |
| 721-1044, gnl|Mm7|chr19 (56356427-56356742) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 181-329, gnl|bosTau2|chr26 (22851186-22851040) | |
| 181-329, gnl|canFam2|chr28 (27623045-27623197) | |
| 181-329, gnl|danRer3|chr23 (32915742-32915896) | |
| 181-329, gnl|dasNov1|scaffold_1703 (160046-160186) | |
| 181-329, gnl|echTel1|scaffold_286426 (73946-73788) | |
| 181-329, gnl|fr1|chrUn (213623714-213623551) | |
| 181-329, gnl|galGal2|chr6 (26575728-26575863) | |
| 181-329, gnl|hg17|chr10 (115470774-115470926) | |
| 181-329, gnl|Hg17|chr10 (115470778-115470924) | |
| 181-329, gnl|loxAfr1|scaffold_198170 (961-806) | |
| 181-329, gnl|mm7|chr19 (56348210-56348362) | |
| 181-329, gnl|Mm7|chr19 (56348214-56348360) | |
| 181-329, gnl|monDom2|scaffold_14 (48498471-48498307) | |
| 181-329, gnl|oryCun1|scaffold_211247 (28961-29113) | |
| 181-329, gnl|panTro1|chr8 (117624890-117625042) | |
| 181-329, gnl|rheMac2|chr9 (113383343-113383495) | |
| 181-329, gnl|rn3|chr1 (262923120-262923272) | |
| 181-329, gnl|tetNig1|chr2 (6368926-6368763) | |
| 181-329, gnl|xenTro1|scaffold_1811 (41309-41465) | |
| 448-626, gnl|bosTau2|chr26 (22847551-22847373) | |
| 448-626, gnl|Hg17|chr10 (115475109-115475287) | |
| 448-626, gnl|Mm7|chr19 (56351200-56351378) | |
| 721-1044, gnl|bosTau2|chr26 (22844109-22843784) | |
| 721-1044, gnl|Hg17|chr10 (115479024-115479346) | |
| 721-1044, gnl|Mm7|chr19 (56356427-56356742) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pla (0.401016) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| duo (0.172801) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| duo (0.172801) |