Non-Coding RNA Search

Ss1.1-Mixn-0012o06.5

Sequence:


               
               TTTTCCTGAGCACATCCGCCTAATCAAGATGTTGCCTTTTAGTTGACTGTCCCTGAAGTT
GTGATTGCCTGTTTCAAACTGAACTCTGCAGAGAGTGTTCAGACAGTATTTAGGGTTTCT
AGGGGTAAAGCTGGTGGAAAAGCTGGCCTTTGACCCAGGTTCCTGGAAAAGAAGCCCATT
CCCCCCACCTCTTGACCAACTTATGTCCGTTAGTGCTGAGACGTTCTCCTGGGAACACTG
TTGTTGGCGCCCACGGGCGTGAGGGCTCAGGACGAGCTGAGGTAAAGTTCTCGAGATCGT
GTCTCTCCGAGGCCATCCGCAAGAGCGCCGAGCGGGAGAAGGGCCTGGAGAGGGTCTGTG
TGCCTCATGTCTGCGCCTCATCTGGCTGGTGCCGCCCAGCACCGGGTGGGTGACAAAGAC
CGGGAGGGAAGGGGCTGTTGCTTGCCCCCTTCTTGCCTTATTGCCAATAGGGACGAGGCC
TTCAAGGACGCAGTCAGTGCTAGAGGTTGACAGGCCGCTGAACACTGGGGCTCAGTGACC
TTGTTTCTCCCCTGTCAGGCCCTGCCTTTCTAGGATGTCGCCTTAGAGCAAGAACAGGCC
CAACAGCAGCCCTTCGCTCCCCAGTGAGAGGGGTGTTTGCTGAACTCCGCAGGCACCGCC
AGAGGCCAGAGGGCAGGCAGGCACGCGCGGTCCTCCTCCCCGGCCTGCCGCTCGCCCAGC
ACCTGGGGAGATCCGCGCCCTCTAGGAAGAGGGCACAAGGCTGTGACAGGGAGGTGGGTC
CTTCCTGCATTCCTTCTTGTTTCCCGCTGCTAAAATTGCACTATTTATTGCAATGTAAAA
AGTATCCTGGGGGTGGGGAGGAGTGTTTAATACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCTGAGCACATCCGCCTAATCAAGATGTTGCCTTTTAGTTGACTGTCCCTGAAGTT
GTGATTGCCTGTTTCAAACTGAACTCTGCAGAGAGTGTTCAGACAGTATTTAGGGTTTCT
AGGGGTAAAGCTGGTGGAAAAGCTGGCCTTTGACCCAGGTTCCTGGAAAAGAAGCCCATT
CCCCCCACCTCTTGACCAACTTATGTCCGTTAGTGCTGAGACGTTCTCCTGGGAACACTG
TTGTTGGCGCCCACGGGCGTGAGGGCTCAGGACGAGCTGAGGTAAAGTTCTCGAGATCGT
GTCTCTCCGAGGCCATCCGCAAGAGCGCCGAGCGGGAGAAGGGCCTGGAGAGGGTCTGTG
TGCCTCATGTCTGCGCCTCATCTGGCTGGTGCCGCCCAGCACCGGGTGGGTGACAAAGAC
CGGGAGGGAAGGGGCTGTTGCTTGCCCCCTTCTTGCCTTATTGCCAATAGGGACGAGGCC
TTCAAGGACGCAGTCAGTGCTAGAGGTTGACAGGCCGCTGAACACTGGGGCTCAGTGACC
TTGTTTCTCCCCTGTCAGGCCCTGCCTTTCTAGGATGTCGCCTTAGAGCAAGAACAGGCC
CAACAGCAGCCCTTCGCTCCCCAGTGAGAGGGGTGTTTGCTGAACTCCGCAGGCACCGCC
AGAGGCCAGAGGGCAGGCAGGCACGCGCGGTCCTCCTCCCCGGCCTGCCGCTCGCCCAGC
ACCTGGGGAGATCCGCGCCCTCTAGGAAGAGGGCACAAGGCTGTGACAGGGAGGTGGGTC
CTTCCTGCATTCCTTCTTGTTTCCCGCTGCTAAAATTGCACTATTTATTGCAATGTAAAA
AGTATCCTGGGGGTGGGGAGGAGTGTTTAATACACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               691-876, - strand, RNAz p=0.95095

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               691-876, - strand, RNAz p=0.95095

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-876, gnl|bosTau2|chr5 (25203-24317)
               

               
               1-876, gnl|Hg17|chr22 (38235243-38236199)
               

               
               1-876, gnl|Mm7|chr15 (80335025-80335883)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr5 (25203-24317)
               

               
               1-876, gnl|Hg17|chr22 (38235243-38236199)
               

               
               1-876, gnl|Mm7|chr15 (80335025-80335883)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)

	1-876, gnl\|bosTau2\|chr5 (25203-24317)
	1-876, gnl\|Hg17\|chr22 (38235243-38236199)
	1-876, gnl\|Mm7\|chr15 (80335025-80335883)

	fce (0.271592)
	nlu (0.191681)
	fty (0.17584)
	cag (0.151194)
	ese (0.126502)
	clu (0.119646)
	ecc (0.115035)