Non-Coding RNA Search

Ss1.1-Mixn-0013a16.5

Sequence:


               
               TGCAGGGCGTCTTCACGTGGAGGTGATGCGAGTGACCGGAGCTGTCCCTGAGCGCGTGGT
GGAAGACGACTCCTCGGAGAACTCCAGCGAGAGTGGGAGTCTTGAGGTCGTGGACAGCAG
TGGGGAGGTCATCCACCGAGTCAAAAAACTGACGTGCCGGGTGAAAATTAAAGAGGCAAC
CGGGCTGCCCTTAAGCCTCTCAAACTTCGTCTTCTGTCAGTACACCTTCTGGGACCAGTG
TGAATCCACCGTGGCTGCCCCGGTCGTGGACCCAGAGGTGCCTTCCCCGCAGTCCAAGGA
TGCCCAGTACACCGTGACCTTCTCTCACTGTAAGGACTATGTGGTGAACGTAACAGAGGA
ATTCCTGGAGTTCATATCAGAGGGAGCCCTGGCAATCGAGGTGTGGGGCCACCGCTGTAC
CGGGAACGGCAGCTCCATCTGGGAAGTTGACTCCCTTCACGCTAAGACAAGAACGCTGCA
TGACAGGTGGAACGAAGTTACTCGCAGAATCGAGATGTGGATCTCCATATTAGAGCTGAA
CGAGCTGGGGGAGTACGCGGCCGTGGAGCTGCACCAGGCGAAAGATGTCAACACAGGAGG
CGTCTTTCAACTCAGACAGGGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGGCGTCTTCACGTGGAGGTGATGCGAGTGACCGGAGCTGTCCCTGAGCGCGTGGT
GGAAGACGACTCCTCGGAGAACTCCAGCGAGAGTGGGAGTCTTGAGGTCGTGGACAGCAG
TGGGGAGGTCATCCACCGAGTCAAAAAACTGACGTGCCGGGTGAAAATTAAAGAGGCAAC
CGGGCTGCCCTTAAGCCTCTCAAACTTCGTCTTCTGTCAGTACACCTTCTGGGACCAGTG
TGAATCCACCGTGGCTGCCCCGGTCGTGGACCCAGAGGTGCCTTCCCCGCAGTCCAAGGA
TGCCCAGTACACCGTGACCTTCTCTCACTGTAAGGACTATGTGGTGAACGTAACAGAGGA
ATTCCTGGAGTTCATATCAGAGGGAGCCCTGGCAATCGAGGTGTGGGGCCACCGCTGTAC
CGGGAACGGCAGCTCCATCTGGGAAGTTGACTCCCTTCACGCTAAGACAAGAACGCTGCA
TGACAGGTGGAACGAAGTTACTCGCAGAATCGAGATGTGGATCTCCATATTAGAGCTGAA
CGAGCTGGGGGAGTACGCGGCCGTGGAGCTGCACCAGGCGAAAGATGTCAACACAGGAGG
CGTCTTTCAACTCAGACAGGGTCA

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-164, gnl|bosTau2|chr23 (30079765-30079928)
               

               
               1-164, gnl|canFam2|chr35 (19676936-19677137)
               

               
               1-164, gnl|danRer3|chr17 (12680774-12680932)
               

               
               1-164, gnl|dasNov1|scaffold_122300 (2931-2734)
               

               
               1-164, gnl|echTel1|scaffold_297256 (66897-66693)
               

               
               1-164, gnl|fr1|chrUn (65817200-65817020)
               

               
               1-164, gnl|galGal2|chr2 (60235133-60234947)
               

               
               1-164, gnl|hg17|chr6 (17908151-17908353)
               

               
               1-164, gnl|Hg17|chr6 (17908321-17908158)
               

               
               1-164, gnl|loxAfr1|scaffold_185 (149047-148846)
               

               
               1-164, gnl|mm7|chr13 (46275979-46276176)
               

               
               1-164, gnl|Mm7|chr13 (46276149-46275986)
               

               
               1-164, gnl|monDom2|scaffold_3 (106913223-106913429)
               

               
               1-164, gnl|oryCun1|scaffold_172899 (18841-18639)
               

               
               1-164, gnl|panTro1|chr5 (18278334-18278536)
               

               
               1-164, gnl|rheMac2|chr4 (17848963-17849165)
               

               
               1-164, gnl|rn3|chr17 (23964290-23964088)
               

               
               1-164, gnl|tetNig1|chr8 (6722361-6722530)
               

               
               1-164, gnl|xenTro1|scaffold_64 (848690-848858)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-164, gnl|bosTau2|chr23 (30079765-30079928)
               

               
               1-164, gnl|canFam2|chr35 (19676936-19677137)
               

               
               1-164, gnl|danRer3|chr17 (12680774-12680932)
               

               
               1-164, gnl|dasNov1|scaffold_122300 (2931-2734)
               

               
               1-164, gnl|echTel1|scaffold_297256 (66897-66693)
               

               
               1-164, gnl|fr1|chrUn (65817200-65817020)
               

               
               1-164, gnl|galGal2|chr2 (60235133-60234947)
               

               
               1-164, gnl|hg17|chr6 (17908151-17908353)
               

               
               1-164, gnl|Hg17|chr6 (17908321-17908158)
               

               
               1-164, gnl|loxAfr1|scaffold_185 (149047-148846)
               

               
               1-164, gnl|mm7|chr13 (46275979-46276176)
               

               
               1-164, gnl|Mm7|chr13 (46276149-46275986)
               

               
               1-164, gnl|monDom2|scaffold_3 (106913223-106913429)
               

               
               1-164, gnl|oryCun1|scaffold_172899 (18841-18639)
               

               
               1-164, gnl|panTro1|chr5 (18278334-18278536)
               

               
               1-164, gnl|rheMac2|chr4 (17848963-17849165)
               

               
               1-164, gnl|rn3|chr17 (23964290-23964088)
               

               
               1-164, gnl|tetNig1|chr8 (6722361-6722530)
               

               
               1-164, gnl|xenTro1|scaffold_64 (848690-848858)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cly (0.120642)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	1-164, gnl\|bosTau2\|chr23 (30079765-30079928)
	1-164, gnl\|canFam2\|chr35 (19676936-19677137)
	1-164, gnl\|danRer3\|chr17 (12680774-12680932)
	1-164, gnl\|dasNov1\|scaffold_122300 (2931-2734)
	1-164, gnl\|echTel1\|scaffold_297256 (66897-66693)
	1-164, gnl\|fr1\|chrUn (65817200-65817020)
	1-164, gnl\|galGal2\|chr2 (60235133-60234947)
	1-164, gnl\|hg17\|chr6 (17908151-17908353)
	1-164, gnl\|Hg17\|chr6 (17908321-17908158)
	1-164, gnl\|loxAfr1\|scaffold_185 (149047-148846)
	1-164, gnl\|mm7\|chr13 (46275979-46276176)
	1-164, gnl\|Mm7\|chr13 (46276149-46275986)
	1-164, gnl\|monDom2\|scaffold_3 (106913223-106913429)
	1-164, gnl\|oryCun1\|scaffold_172899 (18841-18639)
	1-164, gnl\|panTro1\|chr5 (18278334-18278536)
	1-164, gnl\|rheMac2\|chr4 (17848963-17849165)
	1-164, gnl\|rn3\|chr17 (23964290-23964088)
	1-164, gnl\|tetNig1\|chr8 (6722361-6722530)
	1-164, gnl\|xenTro1\|scaffold_64 (848690-848858)