Ss1.1-Mixn-0013a22.5
|
GCCATTCTGTCCCATGCTGATGCTCGACAGGTAGTACTGAAATTTACTGTCCCAGACTTT
GAGAATTCGCTGGAATTTTTCACTTCTTTTGCTCAGAGAAGAGGACTGCACCAAAAAGGT
GGAAGTCCAAATGTAGAAGGTGCTGCCAAACTGCTGTGGTCTGAGTGGACAGGTGCCTCC
TTAGGTTACTATTGTCACCCCCCTACATCCTGGACTCTTTCTTCACATTTTAATGAAAGC
TTGTGACAGACATGAAATGGGGCTTTAATCTGGAAGAATTAGAAAAGAATAATGCACGCA
GCATACAAGCTATCAAGGGTCCTCGTTTAGCCGGGAGCATCCTTTTCCAGTCTTCAGGTT
TGACAAATGGAATAATAGAGGAAGGGGACATACCTGAAGAACCCCTGAAACAGAAAGAAC
AGAAGCAAGAGGAGGGGGAGGACTATGGAGATGTTGACACCGACCAAGAAAGTGTTGACA
AAGAAGGTGATGAAAAGAGCTCAGACACATCACCTGCAGAAGAGGCCTTTGAGGCTGTGC
CCAAGGGGTCTCAAGCAGGTGAGCAGTCTGCACTTTCTTTTGTCATGGAAAAGATGACTG
AGGAAGATGATGCTTATGACTTCAGTACAGACTACATGTTATAGAACCTCATTCTTCTAT
AAGGGTTTTTTGCTTGTTCTTAATATTGTGGACAGACTGTCAAGCTGTTCTGTATGTTAT
ACCAGTATGACATGAACTGTGTAGAAAATATTTTGTGAATATGTGTAACAATAAATAGAA
ATCAAGTAACTCAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GCCATTCTGTCCCATGCTGATGCTCGACAGGTAGTACTGAAATTTACTGTCCCAGACTTT
GAGAATTCGCTGGAATTTTTCACTTCTTTTGCTCAGAGAAGAGGACTGCACCAAAAAGGT
GGAAGTCCAAATGTAGAAGGTGCTGCCAAACTGCTGTGGTCTGAGTGGACAGGTGCCTCC
TTAGGTTACTATTGTCACCCCCCTACATCCTGGACTCTTTCTTCACATTTTAATGAAAGC
TTGTGACAGACATGAAATGGGGCTTTAATCTGGAAGAATTAGAAAAGAATAATGCACGCA
GCATACAAGCTATCAAGGGTCCTCGTTTAGCCGGGAGCATCCTTTTCCAGTCTTCAGGTT
TGACAAATGGAATAATAGAGGAAGGGGACATACCTGAAGAACCCCTGAAACAGAAAGAAC
AGAAGCAAGAGGAGGGGGAGGACTATGGAGATGTTGACACCGACCAAGAAAGTGTTGACA
AAGAAGGTGATGAAAAGAGCTCAGACACATCACCTGCAGAAGAGGCCTTTGAGGCTGTGC
CCAAGGGGTCTCAAGCAGGTGAGCAGTCTGCACTTTCTTTTGTCATGGAAAAGATGACTG
AGGAAGATGATGCTTATGACTTCAGTACAGACTACATGTTATAGAACCTCATTCTTCTAT
AAGGGTTTTTTGCTTGTTCTTAATATTGTGGACAGACTGTCAAGCTGTTCTGTATGTTAT
ACCAGTATGACATGAACTGTGTAGAAAATATTTTGTGAATATGTGTAACAATAAATAGAA
ATCAAGTAACTCAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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29-173, gnl|bosTau2|chr22 (42401448-42401592) |
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29-173, gnl|canFam2|chr20 (40100252-40100079) |
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29-173, gnl|danRer3|chrUn (135483453-135483621) |
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29-173, gnl|dasNov1|scaffold_112305 (5518-5346) |
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29-173, gnl|echTel1|scaffold_218056 (8694-8849) |
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29-173, gnl|fr1|chrUn (75154624-75154796) |
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29-173, gnl|galGal2|chr12 (674788-674951) |
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29-173, gnl|hg17|chr3 (52702231-52702405) |
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29-173, gnl|Hg17|chr3 (52702241-52702385) |
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29-173, gnl|loxAfr1|scaffold_102 (132900-132728) |
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29-173, gnl|mm7|chr14 (28443456-28443283) |
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29-173, gnl|Mm7|chr14 (28443444-28443300) |
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29-173, gnl|monDom2|scaffold_5 (70280033-70279855) |
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29-173, gnl|oryCun1|scaffold_212982 (48035-48208) |
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29-173, gnl|panTro1|chr2 (54335746-54335920) |
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29-173, gnl|rheMac2|chr2 (83670453-83670279) |
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29-173, gnl|rn3|chr16 (6445660-6445487) |
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29-173, gnl|tetNig1|chr11 (8454562-8454734) |
| |
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296-717, gnl|bosTau2|chr16 (48498056-48498486) |
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296-717, gnl|Hg17|chr3 (52702688-52703398) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
29-173, gnl|bosTau2|chr22 (42401448-42401592) |
|
29-173, gnl|canFam2|chr20 (40100252-40100079) |
|
29-173, gnl|danRer3|chrUn (135483453-135483621) |
|
29-173, gnl|dasNov1|scaffold_112305 (5518-5346) |
|
29-173, gnl|echTel1|scaffold_218056 (8694-8849) |
|
29-173, gnl|fr1|chrUn (75154624-75154796) |
|
29-173, gnl|galGal2|chr12 (674788-674951) |
|
29-173, gnl|hg17|chr3 (52702231-52702405) |
|
29-173, gnl|Hg17|chr3 (52702241-52702385) |
|
29-173, gnl|loxAfr1|scaffold_102 (132900-132728) |
|
29-173, gnl|mm7|chr14 (28443456-28443283) |
|
29-173, gnl|Mm7|chr14 (28443444-28443300) |
|
29-173, gnl|monDom2|scaffold_5 (70280033-70279855) |
|
29-173, gnl|oryCun1|scaffold_212982 (48035-48208) |
|
29-173, gnl|panTro1|chr2 (54335746-54335920) |
|
29-173, gnl|rheMac2|chr2 (83670453-83670279) |
|
29-173, gnl|rn3|chr16 (6445660-6445487) |
|
29-173, gnl|tetNig1|chr11 (8454562-8454734) |
| |
|
296-717, gnl|bosTau2|chr16 (48498056-48498486) |
|
296-717, gnl|Hg17|chr3 (52702688-52703398) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nco (0.161734) |
|
fat (0.147427) |
|
ski (0.146735) |
|
lin (0.145603) |
|
spl (0.143184) |
|
thg (0.126791) |
|
bla (0.124347) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nco (0.161734) |
|
fat (0.147427) |
|
ski (0.146735) |
|
lin (0.145603) |
|
spl (0.143184) |
|
thg (0.126791) |
|
bla (0.124347) |
