Non-Coding RNA Search

Ss1.1-Mixn-0013c16.5

Sequence:


               
               GTCCCAGGGGGCCCAGGCTGTCCCGACGTGTCCCCGGAGTCCTGGCCCAAGGTCTCGGCG
CTCGAGGGGCCCGCGCCTGCTGCGAAGCCTACGCGGGAGGCCGCGGAGGACTCTCAGTCC
TCGGCCTCGTCGCCCTCCTGGCCCTCCTCGCGGCCGCCCACCGCGGGGGTGGGCAGGTCG
TCACTGCGCTGGGCCGGGTGGGGTGGGATGGCGGCCGGCACGTTGCTGGAGGCCGGCCTG
GCCCGGGTGCTCTTCTACCCGACGCTGCTGTACACCCTGTTCCGCGGGAAGGTGCCGGGC
CGGGCCCACCGCGACTGGTACAACCGCATCGACTCCACGGTGCTGCTGGGCGCGTTGCCG
CTGCGGAGCATGACGCGCCGGCTGGTTCAGGACGAGAACGTGCGCGGGGTGATCACCATG
AATGAGGAGTACGAGACGAGGTTCCTGTGCAACTCCTCAAAGGAGTGGAAGAATTTAGGA
GTCGAGCAGCTGCGGCTCAGCACGGTAGACATGACTGGAGTCCCGACCTTGGCTAACCTT
CAGAAAGGAGTCCAGTTTGCTCTCAAGTACCAGTCACAAGGCCAGTCTGTCTATGTGCAC
TGTAAGGCTGGGCGTTCCAGAAGTGCCACTATGGTGGCAGCGTATCTGATCCAGATGTAC
AACTGGACTCCAGAGGAGGCCGTGAGAGCCATCACCAAGATTCGGTCACACATCTACATC
AGACCTGGCCAGTTGGAAGTCCTCAAAGAGTTCCACAAGGTTATCACTGCAGGGGCAGCA
AAGAATGACACTTGTCACACATTACAGAGCTGAAGTACATGGATTTAGAAAGACCTCAAG
ACAACCTGGCTTGCTACAGAATGAAAATGTTTAACAGGACCAAAGGGGCTTAAGCCTAGA
CTTGACAGAATAGAAATGTGCTAAGTAATGGTTAATTTTGCTCCCTTTGTCTTGTTTCAT
TTTCCTGAAATAACACTGTTGTATGGCTAGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCAGGGGGCCCAGGCTGTCCCGACGTGTCCCCGGAGTCCTGGCCCAAGGTCTCGGCG
CTCGAGGGGCCCGCGCCTGCTGCGAAGCCTACGCGGGAGGCCGCGGAGGACTCTCAGTCC
TCGGCCTCGTCGCCCTCCTGGCCCTCCTCGCGGCCGCCCACCGCGGGGGTGGGCAGGTCG
TCACTGCGCTGGGCCGGGTGGGGTGGGATGGCGGCCGGCACGTTGCTGGAGGCCGGCCTG
GCCCGGGTGCTCTTCTACCCGACGCTGCTGTACACCCTGTTCCGCGGGAAGGTGCCGGGC
CGGGCCCACCGCGACTGGTACAACCGCATCGACTCCACGGTGCTGCTGGGCGCGTTGCCG
CTGCGGAGCATGACGCGCCGGCTGGTTCAGGACGAGAACGTGCGCGGGGTGATCACCATG
AATGAGGAGTACGAGACGAGGTTCCTGTGCAACTCCTCAAAGGAGTGGAAGAATTTAGGA
GTCGAGCAGCTGCGGCTCAGCACGGTAGACATGACTGGAGTCCCGACCTTGGCTAACCTT
CAGAAAGGAGTCCAGTTTGCTCTCAAGTACCAGTCACAAGGCCAGTCTGTCTATGTGCAC
TGTAAGGCTGGGCGTTCCAGAAGTGCCACTATGGTGGCAGCGTATCTGATCCAGATGTAC
AACTGGACTCCAGAGGAGGCCGTGAGAGCCATCACCAAGATTCGGTCACACATCTACATC
AGACCTGGCCAGTTGGAAGTCCTCAAAGAGTTCCACAAGGTTATCACTGCAGGGGCAGCA
AAGAATGACACTTGTCACACATTACAGAGCTGAAGTACATGGATTTAGAAAGACCTCAAG
ACAACCTGGCTTGCTACAGAATGAAAATGTTTAACAGGACCAAAGGGGCTTAAGCCTAGA
CTTGACAGAATAGAAATGTGCTAAGTAATGGTTAATTTTGCTCCCTTTGTCTTGTTTCAT
TTTCCTGAAATAACACTGTTGTATGGCTAGAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57100145|ref|XP_540742.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57100145|ref|XP_540742.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-407, gnl|bosTau2|chr15 (48777192-48776795)
               

               
               1-407, gnl|Hg17|chr11 (47543587-47543954)
               

               
               1-407, gnl|Mm7|chr2 (90768693-90768289)
               


               
               652-991, gnl|bosTau2|chr15 (48771784-48771447)
               

               
               652-991, gnl|Hg17|chr11 (47549596-47549938)
               

               
               652-991, gnl|Mm7|chr2 (90762038-90761688)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-407, gnl|bosTau2|chr15 (48777192-48776795)
               

               
               1-407, gnl|Hg17|chr11 (47543587-47543954)
               

               
               1-407, gnl|Mm7|chr2 (90768693-90768289)
               


               
               652-991, gnl|bosTau2|chr15 (48771784-48771447)
               

               
               652-991, gnl|Hg17|chr11 (47549596-47549938)
               

               
               652-991, gnl|Mm7|chr2 (90762038-90761688)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               fhi (0.339155)
               

               
               ctl (0.306138)
               

               
               ova (0.258264)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               ctl (0.306138)
               

               
               ova (0.258264)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	1-407, gnl\|bosTau2\|chr15 (48777192-48776795)
	1-407, gnl\|Hg17\|chr11 (47543587-47543954)
	1-407, gnl\|Mm7\|chr2 (90768693-90768289)

	652-991, gnl\|bosTau2\|chr15 (48771784-48771447)
	652-991, gnl\|Hg17\|chr11 (47549596-47549938)
	652-991, gnl\|Mm7\|chr2 (90762038-90761688)

	fhi (0.339155)
	ctl (0.306138)
	ova (0.258264)
	ecc (0.23007)
	fcc (0.197785)
	sto (0.179824)
	gul (0.177588)
	duo (0.172801)
	nje (0.16592)
	mga (0.160205)
	lin (0.145603)
	pty (0.142714)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)
	pgl (0.118483)
	ebs (0.118301)