Non-Coding RNA Search

Ss1.1-Mixn-0013g12.5

Sequence:


               
               GTCCCCACTGCCAGCAGGCCATCAACCACCAAGATCTCCTATGAGATCGGCCTGATGAAC
TTCGTGCTGGGCTTCTTCTGCTGCTTCATGGGGTGTGATCTGGGCTGTTGCTTGATCCCC
TGCCTCATCAACGACTTCAAGGATGTGACGCACACGTGCCCCAGCTGCAAAGCCTACATC
TACACGTACAAGCGCCTATGCTAACGGAGCTGTGACTGGACTCCCCGCTGTCAGTCTGGC
CCCTTGTGCTTTGCTCCCCGCGCTGAGTGGCTCGCTTCCCCGCTCCCACCTGGGGGTGGA
GGCCGTTCCACCATCCGTCCCTTGGAAGTCTTGTCCCCTTCGCCTCGCCCTTCCCTGAGC
ATCTGACTCTCCTGACAGAAACTCTGTCAGATTTAAGGCCAAGGGTCAGCAAGCGGCAGG
GGGATGGCGCTGAGCTTGTGTGTTGCTGGTTTGCTTGGTGTTTATGATCCGAAGATAAGC
AGGGAGTGGTCTCTTCACACGGTCTCTTTGCCGGGGTTTCTTCCTTCATTTCTGTACCAG
GTACAGGTTTGGTCCCGAGTCTCCCCGGGGCCAGAGCAGCCAGAGCAATGGCTGGTTCCG
CAGACCTGGGGCCTGCAGTGGGGTCATTTCTGACCTGCCGGGCTGAGTGGGGGGAGGACC
CAAGCAGGACAGCGGCATCAGGCCTTTGTGTGTTTCTGGAGCGCTAGAGGCAGGTGTGAC
CATCAGAAGCAAAGACTCTGTCGCTCAGAATTCTCAGGAACGCTGAGCAGTGCCCAGGAG
CCACCTGGGGTAAGGTAGTGACGTCGACTCCCCTCCAGGCCATGGGTTAAGGGACTGGGC
CCTAGCTCGCTGAGAAGGGACTCTCCTCTGGCCCTGCCCAGCTCCCCTTCCAGCCACATC
ACTGCAAACCCCAGGGCCGTGAGGGTCACCCTGGAATCTAGCCCATCTGTCTGCACCATG
TCCTTGCTGCGTGTGGGCACCACTTCTGCCTGGTAGCTGGTGTGTCCCAGCTGGAACCAT
AGATGACAGACAGGAGGGCCTCCTTTCGTGCACACTCAAGATTTGCAGTGCCCTCTCCAC
GGTCCTCTCCCCAGTAACGCTGGGCCCTTCGCCCCTGGCTGACTCCTGCCAGGGTGTTTG
CCCCAGCAGCAGGCACTGCAGTGAGAGCAGCTGCAGTGCTGGACTGGGGACAGGCTGGGA
TGAGAAAGGAGCAGCCTCAAGTGGCAGAAGTGCCCTGAGGGACACCAGCCCTGCCCTGGG
CCTGAGTCAACACTGTCTTTACTTCCTGAATGGGTTGTCCATGAACTTGTTCCCCTGGAC
CGCTGTATCCTGCTGCCGCCCCACTCCTGGTCTCGCACTGCCACTGCATGGCCTCCTGTC
ACTGTGAATCGTGGCCGGTCTCGGTTTGTAGTTTCTCATTAAATTGGCCCTTCACTCCCC
CGCCCTGGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCCACTGCCAGCAGGCCATCAACCACCAAGATCTCCTATGAGATCGGCCTGATGAAC
TTCGTGCTGGGCTTCTTCTGCTGCTTCATGGGGTGTGATCTGGGCTGTTGCTTGATCCCC
TGCCTCATCAACGACTTCAAGGATGTGACGCACACGTGCCCCAGCTGCAAAGCCTACATC
TACACGTACAAGCGCCTATGCTAACGGAGCTGTGACTGGACTCCCCGCTGTCAGTCTGGC
CCCTTGTGCTTTGCTCCCCGCGCTGAGTGGCTCGCTTCCCCGCTCCCACCTGGGGGTGGA
GGCCGTTCCACCATCCGTCCCTTGGAAGTCTTGTCCCCTTCGCCTCGCCCTTCCCTGAGC
ATCTGACTCTCCTGACAGAAACTCTGTCAGATTTAAGGCCAAGGGTCAGCAAGCGGCAGG
GGGATGGCGCTGAGCTTGTGTGTTGCTGGTTTGCTTGGTGTTTATGATCCGAAGATAAGC
AGGGAGTGGTCTCTTCACACGGTCTCTTTGCCGGGGTTTCTTCCTTCATTTCTGTACCAG
GTACAGGTTTGGTCCCGAGTCTCCCCGGGGCCAGAGCAGCCAGAGCAATGGCTGGTTCCG
CAGACCTGGGGCCTGCAGTGGGGTCATTTCTGACCTGCCGGGCTGAGTGGGGGGAGGACC
CAAGCAGGACAGCGGCATCAGGCCTTTGTGTGTTTCTGGAGCGCTAGAGGCAGGTGTGAC
CATCAGAAGCAAAGACTCTGTCGCTCAGAATTCTCAGGAACGCTGAGCAGTGCCCAGGAG
CCACCTGGGGTAAGGTAGTGACGTCGACTCCCCTCCAGGCCATGGGTTAAGGGACTGGGC
CCTAGCTCGCTGAGAAGGGACTCTCCTCTGGCCCTGCCCAGCTCCCCTTCCAGCCACATC
ACTGCAAACCCCAGGGCCGTGAGGGTCACCCTGGAATCTAGCCCATCTGTCTGCACCATG
TCCTTGCTGCGTGTGGGCACCACTTCTGCCTGGTAGCTGGTGTGTCCCAGCTGGAACCAT
AGATGACAGACAGGAGGGCCTCCTTTCGTGCACACTCAAGATTTGCAGTGCCCTCTCCAC
GGTCCTCTCCCCAGTAACGCTGGGCCCTTCGCCCCTGGCTGACTCCTGCCAGGGTGTTTG
CCCCAGCAGCAGGCACTGCAGTGAGAGCAGCTGCAGTGCTGGACTGGGGACAGGCTGGGA
TGAGAAAGGAGCAGCCTCAAGTGGCAGAAGTGCCCTGAGGGACACCAGCCCTGCCCTGGG
CCTGAGTCAACACTGTCTTTACTTCCTGAATGGGTTGTCCATGAACTTGTTCCCCTGGAC
CGCTGTATCCTGCTGCCGCCCCACTCCTGGTCTCGCACTGCCACTGCATGGCCTCCTGTC
ACTGTGAATCGTGGCCGGTCTCGGTTTGTAGTTTCTCATTAAATTGGCCCTTCACTCCCC
CGCCCTGGGCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|14043229|gb|AAH07604.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|14043229|gb|AAH07604.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1051-1168, - strand, RNAz p=0.505674

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1051-1168, - strand, RNAz p=0.505674

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               92-1452, gnl|bosTau2|chr25 (4475985-4474640)
               

               
               92-1452, gnl|Hg17|chr16 (4502686-4501317)
               

               
               92-1452, gnl|Mm7|chr16 (4441496-4440176)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-1452, gnl|bosTau2|chr25 (4475985-4474640)
               

               
               92-1452, gnl|Hg17|chr16 (4502686-4501317)
               

               
               92-1452, gnl|Mm7|chr16 (4441496-4440176)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               fcc (0.593354)
               

               
               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               jej (0.395687)
               

               
               cag (0.302389)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               jej (0.395687)
               

               
               cag (0.302389)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	92-1452, gnl\|bosTau2\|chr25 (4475985-4474640)
	92-1452, gnl\|Hg17\|chr16 (4502686-4501317)
	92-1452, gnl\|Mm7\|chr16 (4441496-4440176)

	fcc (0.593354)
	fce (0.543183)
	fhi (0.508733)
	jej (0.395687)
	cag (0.302389)
	cov (0.264306)
	med (0.232504)
	fli (0.202881)
	eje (0.197668)
	fty (0.17584)
	ill (0.175593)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	lnt (0.142308)
	nmm (0.132802)
	eru (0.120048)
	ecc (0.115035)