Non-Coding RNA Search

Ss1.1-Mixn-0013h17.5

Sequence:


               
               AGGGTCCCCTATATCCTCAGAAGAGAGGCGGCGCCTGGATAGGAAGCATCTGGATGACAT
CACGGCAGCTCGGCTTCTGCCACTACACCACATGCCCACACAGCTGCTCTCCATAGAAGA
GTCGTTGGCACTTCAGAAACAGCAGAAACAGAGTTATGAGGAAATGCAAGCCAAGCTCGC
AGCCCAAAAATTAGCTGAAAGACTGAATATTAAAATGCAGAGCTATAATCCAGAAGGGGA
GCCTTTGAGGAAATACCGAGAAGTAAGGGATGAAGATGATCATCAGTCTTCTGACGATGA
ATGCTAAAGATGGGACTTGGATCGTCTACGAAGTCTCTGCCTGTTGAGATCCCTTATCTC
ACATCAGCCTTTCTAACAAGTATCAAGATCAATGTTGGAGCTCGTTGAAAGAATTGCAAC
ACAAAGTTACCCAAGGAAGCTATAAAAACAGCCCACTTTCAGAAAATAACTTTCATGTGC
TTGAAAAGTTTAATATTTGAATAATGTATTTAATCACATTGTGTTCAAGTTTTGGCAGTA
TGTCATGAGTTAACTGGTCAGATATTTTATCGAATGGTAGAGCACGTTTTTTTTTTCCCT
CTAAGCCAAATGAAAGCAGGTGACTAACTGCCTTTTTCTTATTCTTACCTCTCTCAGATA
GCATTTATTACATGTCTTTTGGTGAATTATTTCGATGTCCCAGGGATTACCTAAAATGAG
TTACTAAAATAGAGTTCCCTCCTTTTTTTTGCATAATGAAGGGAACAGTCTAGGGAATTT
TGTGCACGTTTGCATGGGGCTGTTGCAGAATTGGATGTGAAATACCAGGGAAGACACAGA
AAATGCTTAAATGTTTCCTTCTTCTGTCTTTGCTTAGGAAGAGTATTTTTCTTCTGATTA
GGAATAAGTGGTACTTAGCTGATGGAGGGTGGAGAACCTTTCTAGATGACCAGATTTGCC
TGGATTAACATGAGGTCAAGAAAAAGTCTAAGATGACTGATGTAGGTGAAAGGAATAGTT
GGCTTTGGCCTGATTTGACTTCATTTTTTTAAGAGATGATAGGTTCAATTTGATAAGAAA
CCCAAAACATTTTTTAAAAGCTGCGATTGGTTATCAATATATTGCTTCTCCCTCCCGTCA
CCAAAAGAGGCTTATGTGGGCTGCAGAAACCTCAATCTCATATGCCATTTTAAAGGATGA
TGTGGTTGTCTCCAGAAAAATCGACACCTGTGTTAGCCAAGATTTCTTTGTCTAATATGT
TAGCACCTTTAAACAGTGTGGAAAGAATAAAGTCTTATTCAGAGAAACTCCAAAATGCTA
ATGGTGATGCTTTACTGGTGCTTGATTAAATGTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGTCCCCTATATCCTCAGAAGAGAGGCGGCGCCTGGATAGGAAGCATCTGGATGACAT
CACGGCAGCTCGGCTTCTGCCACTACACCACATGCCCACACAGCTGCTCTCCATAGAAGA
GTCGTTGGCACTTCAGAAACAGCAGAAACAGAGTTATGAGGAAATGCAAGCCAAGCTCGC
AGCCCAAAAATTAGCTGAAAGACTGAATATTAAAATGCAGAGCTATAATCCAGAAGGGGA
GCCTTTGAGGAAATACCGAGAAGTAAGGGATGAAGATGATCATCAGTCTTCTGACGATGA
ATGCTAAAGATGGGACTTGGATCGTCTACGAAGTCTCTGCCTGTTGAGATCCCTTATCTC
ACATCAGCCTTTCTAACAAGTATCAAGATCAATGTTGGAGCTCGTTGAAAGAATTGCAAC
ACAAAGTTACCCAAGGAAGCTATAAAAACAGCCCACTTTCAGAAAATAACTTTCATGTGC
TTGAAAAGTTTAATATTTGAATAATGTATTTAATCACATTGTGTTCAAGTTTTGGCAGTA
TGTCATGAGTTAACTGGTCAGATATTTTATCGAATGGTAGAGCACGTTTTTTTTTTCCCT
CTAAGCCAAATGAAAGCAGGTGACTAACTGCCTTTTTCTTATTCTTACCTCTCTCAGATA
GCATTTATTACATGTCTTTTGGTGAATTATTTCGATGTCCCAGGGATTACCTAAAATGAG
TTACTAAAATAGAGTTCCCTCCTTTTTTTTGCATAATGAAGGGAACAGTCTAGGGAATTT
TGTGCACGTTTGCATGGGGCTGTTGCAGAATTGGATGTGAAATACCAGGGAAGACACAGA
AAATGCTTAAATGTTTCCTTCTTCTGTCTTTGCTTAGGAAGAGTATTTTTCTTCTGATTA
GGAATAAGTGGTACTTAGCTGATGGAGGGTGGAGAACCTTTCTAGATGACCAGATTTGCC
TGGATTAACATGAGGTCAAGAAAAAGTCTAAGATGACTGATGTAGGTGAAAGGAATAGTT
GGCTTTGGCCTGATTTGACTTCATTTTTTTAAGAGATGATAGGTTCAATTTGATAAGAAA
CCCAAAACATTTTTTAAAAGCTGCGATTGGTTATCAATATATTGCTTCTCCCTCCCGTCA
CCAAAAGAGGCTTATGTGGGCTGCAGAAACCTCAATCTCATATGCCATTTTAAAGGATGA
TGTGGTTGTCTCCAGAAAAATCGACACCTGTGTTAGCCAAGATTTCTTTGTCTAATATGT
TAGCACCTTTAAACAGTGTGGAAAGAATAAAGTCTTATTCAGAGAAACTCCAAAATGCTA
ATGGTGATGCTTTACTGGTGCTTGATTAAATGTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55622796|ref|XP_526605.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55622796|ref|XP_526605.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               198-316, + strand, RNAz p=0.560597

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-316, + strand, RNAz p=0.560597

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK128618, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK128618, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               159-1021, gnl|bosTau2|chr10 (34634367-34633494)
               

               
               159-1021, gnl|Hg17|chr15 (55794024-55794830)
               

               
               159-1021, gnl|Mm7|chr9 (71514391-71513666)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-1021, gnl|bosTau2|chr10 (34634367-34633494)
               

               
               159-1021, gnl|Hg17|chr15 (55794024-55794830)
               

               
               159-1021, gnl|Mm7|chr9 (71514391-71513666)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cty (0.31224)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

	159-1021, gnl\|bosTau2\|chr10 (34634367-34633494)
	159-1021, gnl\|Hg17\|chr15 (55794024-55794830)
	159-1021, gnl\|Mm7\|chr9 (71514391-71513666)

	cty (0.31224)
	tra (0.246184)
	hea (0.204499)
	fcc (0.197785)
	gul (0.177588)
	sin (0.174948)
	mga (0.160205)
	tbr (0.154178)
	lyg (0.133103)
	ova (0.129132)
	thg (0.126791)
	bla (0.124347)
	eru (0.120048)
	ldo (0.0970026)