Ss1.1-Mixn-0013i12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGACCCCGACGGCCCCGGCCTCCCTGAGCGGCATGCGGCGCTGAGGCGCGGCGGACCCC GGGCGGCGCCATGAACCTCCTACCCTGCAACCCGCACGGCAACGGGCTGCTGTATGCCGG CTTCAACCAGGACCACGGATGCTTTGCGTGTGGGATGGAAAATGGATTCCGAGTCTATAA CACCGACCCGCTGAAGGAAAAAGAGAAGCAAGAATTTCTAGAAGGAGGAGTTGGCCATAT TGAAATGTTATTTCGCTGCAACTATTTAGCTTTGGTTGGTGGTGGGAAGAAGCCGAAATA CCCTCCAAACAAAGTGATGATCTGGGACGACCTGAAGAAGAAGACGGTGATCGAGATAGA ATTTTCCACGGAAGTCAAGGCTGCCAAATTGCGGCGAGACAGGATCGTGGTCGTGCTGGA CTCCATGATCAAGGTCTTCACCTTCACGCACAACCCCCACCAGCTGCACGTCTTCGAGAC CTGCTACAACCCCAAAGGCCTCTGTGTCCTGTGCCCCAACAGTAACAACTCCCTCCTGGC CTTCCCGGGCACACACACGGGCCACGTGCAGCTCGTGGACCTGGCCAGCACCGAGAAGCC CCCCGTGGACATTCCCGCCCACGAGGGTGTCCTCAGCTGCATCGCCCTCAACCTGCAGGG AACAAGAATTGCGACCGCGTCTGAGAAAGGGACCCTTATACGAATATTTGATACTTCATC AGGGCATTTAATCCAGGAGCTGCGGAGAGGGTCTCAAGCAGCCAACATTTACTGCATTAA CTTCAATCAGGACGCCTCCCTCATCTGCGTCTCCAGTGACCACGGCACCGTGCACGTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGACCCCGACGGCCCCGGCCTCCCTGAGCGGCATGCGGCGCTGAGGCGCGGCGGACCCC GGGCGGCGCCATGAACCTCCTACCCTGCAACCCGCACGGCAACGGGCTGCTGTATGCCGG CTTCAACCAGGACCACGGATGCTTTGCGTGTGGGATGGAAAATGGATTCCGAGTCTATAA CACCGACCCGCTGAAGGAAAAAGAGAAGCAAGAATTTCTAGAAGGAGGAGTTGGCCATAT TGAAATGTTATTTCGCTGCAACTATTTAGCTTTGGTTGGTGGTGGGAAGAAGCCGAAATA CCCTCCAAACAAAGTGATGATCTGGGACGACCTGAAGAAGAAGACGGTGATCGAGATAGA ATTTTCCACGGAAGTCAAGGCTGCCAAATTGCGGCGAGACAGGATCGTGGTCGTGCTGGA CTCCATGATCAAGGTCTTCACCTTCACGCACAACCCCCACCAGCTGCACGTCTTCGAGAC CTGCTACAACCCCAAAGGCCTCTGTGTCCTGTGCCCCAACAGTAACAACTCCCTCCTGGC CTTCCCGGGCACACACACGGGCCACGTGCAGCTCGTGGACCTGGCCAGCACCGAGAAGCC CCCCGTGGACATTCCCGCCCACGAGGGTGTCCTCAGCTGCATCGCCCTCAACCTGCAGGG AACAAGAATTGCGACCGCGTCTGAGAAAGGGACCCTTATACGAATATTTGATACTTCATC AGGGCATTTAATCCAGGAGCTGCGGAGAGGGTCTCAAGCAGCCAACATTTACTGCATTAA CTTCAATCAGGACGCCTCCCTCATCTGCGTCTCCAGTGACCACGGCACCGTGCACGTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 211-314, + strand, RNAz p=0.527459 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 211-314, + strand, RNAz p=0.527459 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of CR593190, + |
| Aligned organism(s): 91 entry(ies) | More info |
| Aligned organism(s): 91 entry(ies) | Help | Less info |
| 17-138, gnl|bosTau2|chr19 (44205836-44205955) | |
| 17-138, gnl|dasNov1|scaffold_121460 (792-869) | |
| 17-138, gnl|echTel1|scaffold_24280 (3516-3451) | |
| 17-138, gnl|fr1|chrUn (306007182-306007249) | |
| 17-138, gnl|galGal2|chr18 (3228365-3228286) | |
| 17-138, gnl|hg17|chr17 (27463656-27463737) | |
| 17-138, gnl|Hg17|chr17 (78199561-78199438) | |
| 17-138, gnl|Mm7|chr11 (121463394-121463271) | |
| 17-138, gnl|mm7|chr16 (10870401-10870466) | |
| 17-138, gnl|monDom2|scaffold_15 (28396903-28396971) | |
| 17-138, gnl|oryCun1|scaffold_215164 (53280-53195) | |
| 17-138, gnl|panTro1|chr19_random (14887271-14887190) | |
| 17-138, gnl|rheMac2|chr16 (78108155-78108278) | |
| 17-138, gnl|rn3|chr10 (110602972-110603053) | |
| 17-138, gnl|tetNig1|chrUn_random (36305553-36305620) | |
| 17-138, gnl|xenTro1|scaffold_1433 (57873-57954) | |
| 211-314, gnl|bosTau2|chr19 (44218560-44218663) | |
| 211-314, gnl|canFam2|chrUn (11891604-11891705) | |
| 211-314, gnl|canFam2|chrUn (11891705-11891606) | |
| 211-314, gnl|canFam2|chrUn (11891606-11891707) | |
| 211-314, gnl|dasNov1|scaffold_121460 (631-719) | |
| 211-314, gnl|dasNov1|scaffold_121460 (717-633) | |
| 211-314, gnl|dasNov1|scaffold_121460 (633-719) | |
| 211-314, gnl|echTel1|scaffold_151545 (798-904) | |
| 211-314, gnl|echTel1|scaffold_24280 (3691-3603) | |
| 211-314, gnl|fr1|chrUn (306005982-306006072) | |
| 211-314, gnl|fr1|chrUn (306006072-306005973) | |
| 211-314, gnl|fr1|chrUn (306005973-306006074) | |
| 211-314, gnl|galGal2|chr18 (3235059-3234958) | |
| 211-314, gnl|galGal2|chr18 (3234958-3235057) | |
| 211-314, gnl|hg17|chr17 (27463481-27463583) | |
| 211-314, gnl|Hg17|chr17 (78182189-78182088) | |
| 211-314, gnl|hg17|chr18 (32107676-32107775) | |
| 211-314, gnl|hg17|chr9 (104170979-104171085) | |
| 211-314, gnl|loxAfr1|scaffold_54860 (13389-13288) | |
| 211-314, gnl|loxAfr1|scaffold_54860 (13288-13387) | |
| 211-314, gnl|loxAfr1|scaffold_54860 (13376-13286) | |
| 211-314, gnl|Mm7|chr11 (121450262-121450161) | |
| 211-314, gnl|mm7|chr16 (10870228-10870332) | |
| 211-314, gnl|mm7|chr16 (10870330-10870230) | |
| 211-314, gnl|mm7|chr4 (52671119-52671190) | |
| 211-314, gnl|monDom2|scaffold_15 (28396735-28396831) | |
| 211-314, gnl|monDom2|scaffold_15 (28396825-28396726) | |
| 211-314, gnl|oryCun1|scaffold_215164 (53547-53444) | |
| 211-314, gnl|oryCun1|scaffold_215164 (53446-53545) | |
| 211-314, gnl|oryCun1|scaffold_215164 (53545-53444) | |
| 211-314, gnl|panTro1|chr11 (88456505-88456611) | |
| 211-314, gnl|panTro1|chr17 (28081758-28081859) | |
| 211-314, gnl|panTro1|chr19_random (14887447-14887344) | |
| 211-314, gnl|rheMac2|chr15 (31911007-31910901) | |
| 211-314, gnl|rheMac2|chr16 (78107969-78108072) | |
| 211-314, gnl|rheMac2|chr18 (29195840-29195941) | |
| 211-314, gnl|rn3|chr10 (110586296-110586399) | |
| 211-314, gnl|rn3|chr10 (110586397-110586298) | |
| 211-314, gnl|rn3|chr10 (110586298-110586399) | |
| 211-314, gnl|tetNig1|chrUn_random (36304108-36304198) | |
| 211-314, gnl|tetNig1|chrUn_random (36304198-36304099) | |
| 211-314, gnl|tetNig1|chrUn_random (36304114-36304200) | |
| 211-314, gnl|xenTro1|scaffold_1433 (54896-54999) | |
| 211-314, gnl|xenTro1|scaffold_1433 (54997-54898) | |
| 496-689, gnl|bosTau2|chr19 (44225736-44225929) | |
| 496-689, gnl|canFam2|chrUn (11883700-11883890) | |
| 496-689, gnl|canFam2|chrUn (11883893-11883706) | |
| 496-689, gnl|danRer3|chrNA (144971010-144970715) | |
| 496-689, gnl|danRer3|chrNA (144970826-144971004) | |
| 496-689, gnl|echTel1|scaffold_241595 (3551-3365) | |
| 496-689, gnl|echTel1|scaffold_241595 (3372-3549) | |
| 496-689, gnl|fr1|chrUn (306004512-306004785) | |
| 496-689, gnl|fr1|chrUn (306004696-306004518) | |
| 496-689, gnl|galGal2|chr18 (3237657-3237467) | |
| 496-689, gnl|galGal2|chr18 (3237464-3237651) | |
| 496-689, gnl|hg17|chr17 (27463107-27463296) | |
| 496-689, gnl|Hg17|chr17 (78172966-78172773) | |
| 496-689, gnl|hg17|chr18 (32107958-32108143) | |
| 496-689, gnl|Mm7|chr11 (121444621-121444428) | |
| 496-689, gnl|mm7|chr16 (10869868-10870057) | |
| 496-689, gnl|mm7|chr16 (10870060-10869874) | |
| 496-689, gnl|monDom2|scaffold_15 (28396524-28396325) | |
| 496-689, gnl|monDom2|scaffold_88 (777900-778090) | |
| 496-689, gnl|oryCun1|scaffold_215164 (53902-53727) | |
| 496-689, gnl|oryCun1|scaffold_215164 (53724-53896) | |
| 496-689, gnl|panTro1|chr17 (28082042-28082226) | |
| 496-689, gnl|panTro1|chr19_random (14887822-14887632) | |
| 496-689, gnl|rheMac2|chr16 (78099545-78099735) | |
| 496-689, gnl|rheMac2|chr18 (29196124-29196310) | |
| 496-689, gnl|rn3|chr10 (110580794-110580984) | |
| 496-689, gnl|rn3|chr10 (110580987-110580800) | |
| 496-689, gnl|tetNig1|chrUn_random (36302472-36302741) | |
| 496-689, gnl|tetNig1|chrUn_random (36302656-36302478) | |
| 496-689, gnl|xenTro1|scaffold_1433 (52657-52847) | |
| 496-689, gnl|xenTro1|scaffold_1433 (52850-52664) |
| Aligned organism(s): 91 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-138, gnl|bosTau2|chr19 (44205836-44205955) | |
| 17-138, gnl|dasNov1|scaffold_121460 (792-869) | |
| 17-138, gnl|echTel1|scaffold_24280 (3516-3451) | |
| 17-138, gnl|fr1|chrUn (306007182-306007249) | |
| 17-138, gnl|galGal2|chr18 (3228365-3228286) | |
| 17-138, gnl|hg17|chr17 (27463656-27463737) | |
| 17-138, gnl|Hg17|chr17 (78199561-78199438) | |
| 17-138, gnl|Mm7|chr11 (121463394-121463271) | |
| 17-138, gnl|mm7|chr16 (10870401-10870466) | |
| 17-138, gnl|monDom2|scaffold_15 (28396903-28396971) | |
| 17-138, gnl|oryCun1|scaffold_215164 (53280-53195) | |
| 17-138, gnl|panTro1|chr19_random (14887271-14887190) | |
| 17-138, gnl|rheMac2|chr16 (78108155-78108278) | |
| 17-138, gnl|rn3|chr10 (110602972-110603053) | |
| 17-138, gnl|tetNig1|chrUn_random (36305553-36305620) | |
| 17-138, gnl|xenTro1|scaffold_1433 (57873-57954) | |
| 211-314, gnl|bosTau2|chr19 (44218560-44218663) | |
| 211-314, gnl|canFam2|chrUn (11891604-11891705) | |
| 211-314, gnl|canFam2|chrUn (11891705-11891606) | |
| 211-314, gnl|canFam2|chrUn (11891606-11891707) | |
| 211-314, gnl|dasNov1|scaffold_121460 (631-719) | |
| 211-314, gnl|dasNov1|scaffold_121460 (717-633) | |
| 211-314, gnl|dasNov1|scaffold_121460 (633-719) | |
| 211-314, gnl|echTel1|scaffold_151545 (798-904) | |
| 211-314, gnl|echTel1|scaffold_24280 (3691-3603) | |
| 211-314, gnl|fr1|chrUn (306005982-306006072) | |
| 211-314, gnl|fr1|chrUn (306006072-306005973) | |
| 211-314, gnl|fr1|chrUn (306005973-306006074) | |
| 211-314, gnl|galGal2|chr18 (3235059-3234958) | |
| 211-314, gnl|galGal2|chr18 (3234958-3235057) | |
| 211-314, gnl|hg17|chr17 (27463481-27463583) | |
| 211-314, gnl|Hg17|chr17 (78182189-78182088) | |
| 211-314, gnl|hg17|chr18 (32107676-32107775) | |
| 211-314, gnl|hg17|chr9 (104170979-104171085) | |
| 211-314, gnl|loxAfr1|scaffold_54860 (13389-13288) | |
| 211-314, gnl|loxAfr1|scaffold_54860 (13288-13387) | |
| 211-314, gnl|loxAfr1|scaffold_54860 (13376-13286) | |
| 211-314, gnl|Mm7|chr11 (121450262-121450161) | |
| 211-314, gnl|mm7|chr16 (10870228-10870332) | |
| 211-314, gnl|mm7|chr16 (10870330-10870230) | |
| 211-314, gnl|mm7|chr4 (52671119-52671190) | |
| 211-314, gnl|monDom2|scaffold_15 (28396735-28396831) | |
| 211-314, gnl|monDom2|scaffold_15 (28396825-28396726) | |
| 211-314, gnl|oryCun1|scaffold_215164 (53547-53444) | |
| 211-314, gnl|oryCun1|scaffold_215164 (53446-53545) | |
| 211-314, gnl|oryCun1|scaffold_215164 (53545-53444) | |
| 211-314, gnl|panTro1|chr11 (88456505-88456611) | |
| 211-314, gnl|panTro1|chr17 (28081758-28081859) | |
| 211-314, gnl|panTro1|chr19_random (14887447-14887344) | |
| 211-314, gnl|rheMac2|chr15 (31911007-31910901) | |
| 211-314, gnl|rheMac2|chr16 (78107969-78108072) | |
| 211-314, gnl|rheMac2|chr18 (29195840-29195941) | |
| 211-314, gnl|rn3|chr10 (110586296-110586399) | |
| 211-314, gnl|rn3|chr10 (110586397-110586298) | |
| 211-314, gnl|rn3|chr10 (110586298-110586399) | |
| 211-314, gnl|tetNig1|chrUn_random (36304108-36304198) | |
| 211-314, gnl|tetNig1|chrUn_random (36304198-36304099) | |
| 211-314, gnl|tetNig1|chrUn_random (36304114-36304200) | |
| 211-314, gnl|xenTro1|scaffold_1433 (54896-54999) | |
| 211-314, gnl|xenTro1|scaffold_1433 (54997-54898) | |
| 496-689, gnl|bosTau2|chr19 (44225736-44225929) | |
| 496-689, gnl|canFam2|chrUn (11883700-11883890) | |
| 496-689, gnl|canFam2|chrUn (11883893-11883706) | |
| 496-689, gnl|danRer3|chrNA (144971010-144970715) | |
| 496-689, gnl|danRer3|chrNA (144970826-144971004) | |
| 496-689, gnl|echTel1|scaffold_241595 (3551-3365) | |
| 496-689, gnl|echTel1|scaffold_241595 (3372-3549) | |
| 496-689, gnl|fr1|chrUn (306004512-306004785) | |
| 496-689, gnl|fr1|chrUn (306004696-306004518) | |
| 496-689, gnl|galGal2|chr18 (3237657-3237467) | |
| 496-689, gnl|galGal2|chr18 (3237464-3237651) | |
| 496-689, gnl|hg17|chr17 (27463107-27463296) | |
| 496-689, gnl|Hg17|chr17 (78172966-78172773) | |
| 496-689, gnl|hg17|chr18 (32107958-32108143) | |
| 496-689, gnl|Mm7|chr11 (121444621-121444428) | |
| 496-689, gnl|mm7|chr16 (10869868-10870057) | |
| 496-689, gnl|mm7|chr16 (10870060-10869874) | |
| 496-689, gnl|monDom2|scaffold_15 (28396524-28396325) | |
| 496-689, gnl|monDom2|scaffold_88 (777900-778090) | |
| 496-689, gnl|oryCun1|scaffold_215164 (53902-53727) | |
| 496-689, gnl|oryCun1|scaffold_215164 (53724-53896) | |
| 496-689, gnl|panTro1|chr17 (28082042-28082226) | |
| 496-689, gnl|panTro1|chr19_random (14887822-14887632) | |
| 496-689, gnl|rheMac2|chr16 (78099545-78099735) | |
| 496-689, gnl|rheMac2|chr18 (29196124-29196310) | |
| 496-689, gnl|rn3|chr10 (110580794-110580984) | |
| 496-689, gnl|rn3|chr10 (110580987-110580800) | |
| 496-689, gnl|tetNig1|chrUn_random (36302472-36302741) | |
| 496-689, gnl|tetNig1|chrUn_random (36302656-36302478) | |
| 496-689, gnl|xenTro1|scaffold_1433 (52657-52847) | |
| 496-689, gnl|xenTro1|scaffold_1433 (52850-52664) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| nje (0.16592) |