Non-Coding RNA Search

Ss1.1-Mixn-0013o23.5

Sequence:


               
               GGCGGGCGCGCCCAACGAGGCTGCGCTGCTGGCGCTGATGGAGCGCACTGGCTACAGCAT
GGTGCAGGAGAACGGGCAGCGCAAGTACGGAGGCCCTGCGCCCGGCTGGGACGGCCCGCA
CCCGCAGCGCGGCTGCGAGGTCTTCGTGGGCAAGATCCCGCGCGACGTGTACGAGGACGA
GCTGGTGCCGGTGTTCGAGACGGTGGGTCGCATCTACGAGCTCCGCCTCATGATGGACTT
CGATGGCAAGAACCGCGGCTACGCCTTCGTCATGTACTGCCACAAGAACGAGGCCAAGCG
CGCCGTGCGCGAGCTCAACAACTACGAGATCCGGCCCGGCCGCCTGCTGGGCGTGTGCTG
CAGCGTTGACAACTGCCGCCTCTTCATCGGTGGCATCCCCAAGATGAAGAAGCGCGAGGA
GATCCTGGAAGAGATCGCCAAGGTCACGGAGGGCGTGCTCGACGTGATCGTCTACGCCAG
CGCGGCCGACAAGATGAAGAACCGCGGCTTCGCCTTCGTGGAGTACGAGAGCCACCGCGC
CGCTGCGATGGCGCGCCGCAAGCTCATGCCCGGCCGCATCCAGCTGTGGGGCCACCAGAT
CGCCGTGGACTGGGCCGAGCCCGAGATAGACGTGGACGAGGACGTGATGGAGACCGTGAA
GATCCTCTACGTGCGGAACCTCATGATCGAGACCACCGAGGATACCATCAAGAAGAGCTT
CGGCCAGTTCAATCCCGGCTGCGTGGAGCGCGTCAAGAAGATCCGCGACTACGCCTTCGT
GCACTTTGCCAGCCGCGAGGACGCCGTGCACGCCATGAACAACCTCAATGGCACTGAGCT
GGAGGGCTCGTGCCTCGAGGTGACGCTGGCTAAGCCGGTGGACAAGGAGCAGTACTCCCG
CTACCAGAAGGCAGCCAAGGGCGGCGGCGCAGCCGAGGCGGCGGTAGTGCAGCAGCCCAG
CTACGTGTACTCCTGCGACCCCTACACGCTGGCCTACTACGGCTACCCCTACAACGCGCT
TATCGGGCCCAACAGGGACTACTTCGTGAAAGCAGGCAGCATAAGAGGCCGGGGTCGAGG
TGCAGCTGGCAACAGAGCCCCAGGGCCCAGGGGTTCCTACCTTGGGGGATATTCTGCTGG
CCGTGGTATATATAGCCGGTATCATGAAGGAAAAGGAAAACAACAAGAAAAAGGATATGA
ACTTGTACCTAATTTGGAAATCTCGGCCGTCAATCCAGTTGCCATTAAACCTGGTACAGT
GGCCATCCCTGCCATTGGGGCCCAGTATTCCATGTTTCAGGCGGCTCCGGCTCCTAAAAT
GATTGAAGATGGCAAAATCCACCCCATGGAGCACATGATCAGCCCCATCGCTGTGCAGCC
AGACCCAGCCAGCGCTGCTGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGCGCGCCCAACGAGGCTGCGCTGCTGGCGCTGATGGAGCGCACTGGCTACAGCAT
GGTGCAGGAGAACGGGCAGCGCAAGTACGGAGGCCCTGCGCCCGGCTGGGACGGCCCGCA
CCCGCAGCGCGGCTGCGAGGTCTTCGTGGGCAAGATCCCGCGCGACGTGTACGAGGACGA
GCTGGTGCCGGTGTTCGAGACGGTGGGTCGCATCTACGAGCTCCGCCTCATGATGGACTT
CGATGGCAAGAACCGCGGCTACGCCTTCGTCATGTACTGCCACAAGAACGAGGCCAAGCG
CGCCGTGCGCGAGCTCAACAACTACGAGATCCGGCCCGGCCGCCTGCTGGGCGTGTGCTG
CAGCGTTGACAACTGCCGCCTCTTCATCGGTGGCATCCCCAAGATGAAGAAGCGCGAGGA
GATCCTGGAAGAGATCGCCAAGGTCACGGAGGGCGTGCTCGACGTGATCGTCTACGCCAG
CGCGGCCGACAAGATGAAGAACCGCGGCTTCGCCTTCGTGGAGTACGAGAGCCACCGCGC
CGCTGCGATGGCGCGCCGCAAGCTCATGCCCGGCCGCATCCAGCTGTGGGGCCACCAGAT
CGCCGTGGACTGGGCCGAGCCCGAGATAGACGTGGACGAGGACGTGATGGAGACCGTGAA
GATCCTCTACGTGCGGAACCTCATGATCGAGACCACCGAGGATACCATCAAGAAGAGCTT
CGGCCAGTTCAATCCCGGCTGCGTGGAGCGCGTCAAGAAGATCCGCGACTACGCCTTCGT
GCACTTTGCCAGCCGCGAGGACGCCGTGCACGCCATGAACAACCTCAATGGCACTGAGCT
GGAGGGCTCGTGCCTCGAGGTGACGCTGGCTAAGCCGGTGGACAAGGAGCAGTACTCCCG
CTACCAGAAGGCAGCCAAGGGCGGCGGCGCAGCCGAGGCGGCGGTAGTGCAGCAGCCCAG
CTACGTGTACTCCTGCGACCCCTACACGCTGGCCTACTACGGCTACCCCTACAACGCGCT
TATCGGGCCCAACAGGGACTACTTCGTGAAAGCAGGCAGCATAAGAGGCCGGGGTCGAGG
TGCAGCTGGCAACAGAGCCCCAGGGCCCAGGGGTTCCTACCTTGGGGGATATTCTGCTGG
CCGTGGTATATATAGCCGGTATCATGAAGGAAAAGGAAAACAACAAGAAAAAGGATATGA
ACTTGTACCTAATTTGGAAATCTCGGCCGTCAATCCAGTTGCCATTAAACCTGGTACAGT
GGCCATCCCTGCCATTGGGGCCCAGTATTCCATGTTTCAGGCGGCTCCGGCTCCTAAAAT
GATTGAAGATGGCAAAATCCACCCCATGGAGCACATGATCAGCCCCATCGCTGTGCAGCC
AGACCCAGCCAGCGCTGCTGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61885935|ref|XP_613340.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61885935|ref|XP_613340.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-120, - strand, RNAz p=0.831992
               

               
               361-480, - strand, RNAz p=0.896989
               

               
               801-960, - strand, RNAz p=0.648318
               

               
               1257-1404, - strand, RNAz p=0.624302

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.831992
               

               
               361-480, - strand, RNAz p=0.896989
               

               
               801-960, - strand, RNAz p=0.648318
               

               
               1257-1404, - strand, RNAz p=0.624302

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1052, gnl|bosTau2|chr6 (31252823-31251772)
               

               
               1-1052, gnl|Hg17|chr4 (40281761-40280716)
               

               
               1-1052, gnl|Mm7|chr5 (65381992-65380941)
               


               
               1257-1404, gnl|bosTau2|chr6 (31247730-31247583)
               

               
               1257-1404, gnl|Hg17|chr4 (40275810-40275663)
               

               
               1257-1404, gnl|Mm7|chr5 (65377647-65377494)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1052, gnl|bosTau2|chr6 (31252823-31251772)
               

               
               1-1052, gnl|Hg17|chr4 (40281761-40280716)
               

               
               1-1052, gnl|Mm7|chr5 (65381992-65380941)
               


               
               1257-1404, gnl|bosTau2|chr6 (31247730-31247583)
               

               
               1257-1404, gnl|Hg17|chr4 (40275810-40275663)
               

               
               1257-1404, gnl|Mm7|chr5 (65377647-65377494)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-120, - strand, RNAz p=0.831992
	361-480, - strand, RNAz p=0.896989
	801-960, - strand, RNAz p=0.648318
	1257-1404, - strand, RNAz p=0.624302

	1-1052, gnl\|bosTau2\|chr6 (31252823-31251772)
	1-1052, gnl\|Hg17\|chr4 (40281761-40280716)
	1-1052, gnl\|Mm7\|chr5 (65381992-65380941)

	1257-1404, gnl\|bosTau2\|chr6 (31247730-31247583)
	1257-1404, gnl\|Hg17\|chr4 (40275810-40275663)
	1257-1404, gnl\|Mm7\|chr5 (65377647-65377494)