Non-Coding RNA Search

Ss1.1-Mixn-0014a05.5

Sequence:


               
               CAGAGATGTATAATCAAGATGCAAATAGGAGGAAGCCCAAATAAGGGAAAAGGACAGATT
TTTAGCCCGTTCTTGGGCTTGAGGAATAAGGTTTTGATTTGCTCAAAGACATTTCTGAGA
AGCAGCCAGCTGCATGGGCTGCAATTTGTGGCCTTTCCTGAGTGCAGAGAAAATGAAAGA
AAAGGAACCAAGTAAAATGTATGCATTTGGTTCCTCTTAGCAAGACAGCGCCCACTGTTT
GACTGTTGAATAATCTGGATCATGCACATCCAGAGGTGAGATGAAAACATTGTCCCTTAC
AAATGGGCATTTTCAAATGGGTTTAAGTTCACTTTGAGAAAGAAGTGCCTGTAATCTGTG
TTCCTAGTGTTGTTTTAAAGCTTTTGCTTCCTGACTCTTAGCCATTTAAAACTTTGTCGC
AGCAAATGTGATGAACAGAAGTTTACAAAGCAACACTGTAGCTTATGCACCATTTTAAGA
AGTTGCTTGACCTTGATCTATCATCAAAGCAACAAGAATAAACAACAACAAAATTCAAAG
AGAGCAAATACATCCACGTGGCATTATAGGCTTACCTTAGCTAAACCAGTTCCATCATTT
TATGCAGTTCTCAATAATGCCAGGATTAAAATATCAAGCAAGCCATTTACACAGTGGCAA
TTGTGTCTTTGTGTTTGTAATGCCAGTTGTTGGTTAAGCAGCCATTTCACTCTTGCACTG
TAATGAGCTGAAAGGGGAATTAAGATAACGCTTTTTGTTTTTCCTCCCATATTGCTATTC
AACTACCTCTCTATGCTTGATGTCTCTTTAGGGTCTTCTTTCCTCTAAATCTGTCCAAAA
GAAGTTTCAGCTCACCTGCGTTGTAATAACAATGTGATATAGAGAGTTTCTGTGAAAGCT
TGTTGATCATTTAAAAAATGTTTCCTATTGTCTCACTTTGTATCTAACGTAACTCTACCT
GTATTTTGGGGCAAAAATTGCCCAAATAACTTCTGTATCATTTTGTTGGAAGCTATTGAA
TAGAAGGGAAAGTGATCGGAACGTCTATTTTGATCTTGTTCTTCTTGGTTGTAATACATT
TGACCAGAAGATCTTTCAAGGAAGTAGACCTGCACTCAGAAAGCAAGCTCTTATGTATGG
GACAGTGAGGCAGGTGTGAATTGATTAAATTCATTGTTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGATGTATAATCAAGATGCAAATAGGAGGAAGCCCAAATAAGGGAAAAGGACAGATT
TTTAGCCCGTTCTTGGGCTTGAGGAATAAGGTTTTGATTTGCTCAAAGACATTTCTGAGA
AGCAGCCAGCTGCATGGGCTGCAATTTGTGGCCTTTCCTGAGTGCAGAGAAAATGAAAGA
AAAGGAACCAAGTAAAATGTATGCATTTGGTTCCTCTTAGCAAGACAGCGCCCACTGTTT
GACTGTTGAATAATCTGGATCATGCACATCCAGAGGTGAGATGAAAACATTGTCCCTTAC
AAATGGGCATTTTCAAATGGGTTTAAGTTCACTTTGAGAAAGAAGTGCCTGTAATCTGTG
TTCCTAGTGTTGTTTTAAAGCTTTTGCTTCCTGACTCTTAGCCATTTAAAACTTTGTCGC
AGCAAATGTGATGAACAGAAGTTTACAAAGCAACACTGTAGCTTATGCACCATTTTAAGA
AGTTGCTTGACCTTGATCTATCATCAAAGCAACAAGAATAAACAACAACAAAATTCAAAG
AGAGCAAATACATCCACGTGGCATTATAGGCTTACCTTAGCTAAACCAGTTCCATCATTT
TATGCAGTTCTCAATAATGCCAGGATTAAAATATCAAGCAAGCCATTTACACAGTGGCAA
TTGTGTCTTTGTGTTTGTAATGCCAGTTGTTGGTTAAGCAGCCATTTCACTCTTGCACTG
TAATGAGCTGAAAGGGGAATTAAGATAACGCTTTTTGTTTTTCCTCCCATATTGCTATTC
AACTACCTCTCTATGCTTGATGTCTCTTTAGGGTCTTCTTTCCTCTAAATCTGTCCAAAA
GAAGTTTCAGCTCACCTGCGTTGTAATAACAATGTGATATAGAGAGTTTCTGTGAAAGCT
TGTTGATCATTTAAAAAATGTTTCCTATTGTCTCACTTTGTATCTAACGTAACTCTACCT
GTATTTTGGGGCAAAAATTGCCCAAATAACTTCTGTATCATTTTGTTGGAAGCTATTGAA
TAGAAGGGAAAGTGATCGGAACGTCTATTTTGATCTTGTTCTTCTTGGTTGTAATACATT
TGACCAGAAGATCTTTCAAGGAAGTAGACCTGCACTCAGAAAGCAAGCTCTTATGTATGG
GACAGTGAGGCAGGTGTGAATTGATTAAATTCATTGTTTAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               944-1063, + strand, RNAz p=0.680309

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               944-1063, + strand, RNAz p=0.680309

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1109, gnl|bosTau2|chr11 (67191337-67190243)
               

               
               1-1109, gnl|Hg17|chrX (117937849-117938933)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1109, gnl|bosTau2|chr11 (67191337-67190243)
               

               
               1-1109, gnl|Hg17|chrX (117937849-117938933)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               fce (0.271592)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	1-1109, gnl\|bosTau2\|chr11 (67191337-67190243)
	1-1109, gnl\|Hg17\|chrX (117937849-117938933)

	fce (0.271592)
	ret (0.257467)
	spc (0.226732)
	aor (0.195274)
	gul (0.177588)
	fhi (0.169578)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	bla (0.124347)
	tra (0.123092)
	cbl (0.114797)
	cty (0.10408)