Ss1.1-Mixn-0014b22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAAGTTCTGCCCCACTTCAAGGTTGCATCTCAAAGGGTCTTTGACTGGGCTGCCATCA ATAACCCGCAGCCATGAGTTCCGACCAGGAAATGGCTATTTTTGGGGAGGCTGCTCCTTA CCTCCGAAAGTCTGAAAAGGAGCGCATTGAGGCCCAGAATAAACCTTTTGATGCCAAAAC GTCAGTCTTTGTGGCGGAGCCCAAGGAATCCTTTGTCAAAGGGACTGTCCAGAGCAGAGA AGGAGGGAAAGTGACAGTGAAGACGGAAGCAGGGGCGACTTTGACAGTGAAAGAAGACCA GGTGTTCCCCATGAACCCTCCCAAATTTGACAAGATCGAGGACATGGCCATGATGACCCA CCTGCACGAGCCCGCTGTGCTGTACAACCTCAAAGAGCGTTACGCAGCCTGGATGATCTA CACCTACTCGGGCCTCTTCTGTGTCACCGTCAACCCCTACAAGTGGCTGCCGGTGTACAA CGCCGAGGTGGTGACGGCCTACAGAGGCAAAAAGCGCCAGGAGGCCCCGCCCCACATCTT CTCCATCTCCGACAACGCCTATCAGTTCATGCTGACTGATCGGGAGAATCAGTCTATCTT AATCACCGGAGAATCCGGGGCAGGAAAGACTGTGAACACGAAGCGTGTCATCCAGTACTT TGCCACAATCGCCGTCACTGGGGAGAAGAAGAAGGAGGAACCTACTTCTGGCAAAATGCA GGGGACTCTGGAAGATCAGATCATCAGTGCCAACCCCCTGCTCGAGGCCTTTGGCAACGC CAAGACCGTGAGGAATGACAACTCCTCTCGCTTTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAAGTTCTGCCCCACTTCAAGGTTGCATCTCAAAGGGTCTTTGACTGGGCTGCCATCA ATAACCCGCAGCCATGAGTTCCGACCAGGAAATGGCTATTTTTGGGGAGGCTGCTCCTTA CCTCCGAAAGTCTGAAAAGGAGCGCATTGAGGCCCAGAATAAACCTTTTGATGCCAAAAC GTCAGTCTTTGTGGCGGAGCCCAAGGAATCCTTTGTCAAAGGGACTGTCCAGAGCAGAGA AGGAGGGAAAGTGACAGTGAAGACGGAAGCAGGGGCGACTTTGACAGTGAAAGAAGACCA GGTGTTCCCCATGAACCCTCCCAAATTTGACAAGATCGAGGACATGGCCATGATGACCCA CCTGCACGAGCCCGCTGTGCTGTACAACCTCAAAGAGCGTTACGCAGCCTGGATGATCTA CACCTACTCGGGCCTCTTCTGTGTCACCGTCAACCCCTACAAGTGGCTGCCGGTGTACAA CGCCGAGGTGGTGACGGCCTACAGAGGCAAAAAGCGCCAGGAGGCCCCGCCCCACATCTT CTCCATCTCCGACAACGCCTATCAGTTCATGCTGACTGATCGGGAGAATCAGTCTATCTT AATCACCGGAGAATCCGGGGCAGGAAAGACTGTGAACACGAAGCGTGTCATCCAGTACTT TGCCACAATCGCCGTCACTGGGGAGAAGAAGAAGGAGGAACCTACTTCTGGCAAAATGCA GGGGACTCTGGAAGATCAGATCATCAGTGCCAACCCCCTGCTCGAGGCCTTTGGCAACGC CAAGACCGTGAGGAATGACAACTCCTCTCGCTTTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 66-222, - strand, RNAz p=0.963106 | |
| 105-526, - strand, RNAz p=0.88402 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 66-222, - strand, RNAz p=0.963106 | |
| 105-526, - strand, RNAz p=0.88402 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 36-277, gnl|bosTau2|chr19 (2435021-2434780) | |
| 36-277, gnl|Hg17|chr17 (10360722-10360481) | |
| 36-277, gnl|Mm7|chr11 (67283410-67283651) | |
| 66-268, gnl|bosTau2|chr10 (14748943-14749142) | |
| 66-268, gnl|canFam2|chr8 (6683162-6683405) | |
| 66-268, gnl|danRer3|chr24 (32732103-32732307) | |
| 66-268, gnl|dasNov1|scaffold_17525 (48462-48699) | |
| 66-268, gnl|echTel1|scaffold_323511 (6901-7117) | |
| 66-268, gnl|fr1|chrUn (127055733-127055499) | |
| 66-268, gnl|galGal2|chr18 (382646-382864) | |
| 66-268, gnl|hg17|chr14 (22972572-22972803) | |
| 66-268, gnl|Hg17|chr14 (22972789-22972590) | |
| 66-268, gnl|loxAfr1|scaffold_121 (6005-5798) | |
| 66-268, gnl|mm7|chr14 (49859112-49859343) | |
| 66-268, gnl|Mm7|chr14 (49859329-49859130) | |
| 66-268, gnl|monDom2|scaffold_12 (26243852-26243621) | |
| 66-268, gnl|oryCun1|scaffold_207117 (57338-57120) | |
| 66-268, gnl|panTro1|chr15 (21940474-21940705) | |
| 66-268, gnl|rheMac2|chr7 (86274328-86274559) | |
| 66-268, gnl|rn3|chr15 (33110078-33110309) | |
| 66-268, gnl|tetNig1|chrUn_random (96676318-96676074) | |
| 66-268, gnl|xenTro1|scaffold_53 (36336-36114) | |
| 412-578, gnl|bosTau2|chr19 (22495958-22495791) | |
| 412-578, gnl|canFam2|chr5 (37715889-37716074) | |
| 412-578, gnl|danRer3|chr5 (27942955-27942769) | |
| 412-578, gnl|dasNov1|scaffold_2441 (10227-10041) | |
| 412-578, gnl|echTel1|scaffold_323511 (5962-6145) | |
| 412-578, gnl|fr1|chrUn (258633604-258633790) | |
| 412-578, gnl|galGal2|chr18 (354746-354928) | |
| 412-578, gnl|hg17|chr17 (10262676-10262861) | |
| 412-578, gnl|Hg17|chr17 (10262854-10262687) | |
| 412-578, gnl|loxAfr1|scaffold_121 (146670-146485) | |
| 412-578, gnl|mm7|chr11 (67361851-67361666) | |
| 412-578, gnl|Mm7|chr11 (67361671-67361841) | |
| 412-578, gnl|monDom2|scaffold_18 (3109567-3109385) | |
| 412-578, gnl|oryCun1|scaffold_208583 (25234-25048) | |
| 412-578, gnl|panTro1|chr19_random (28157541-28157356) | |
| 412-578, gnl|rheMac2|chr16 (10175468-10175652) | |
| 412-578, gnl|rn3|chr10 (53988518-53988330) | |
| 412-578, gnl|tetNig1|chrUn_random (96692452-96692272) | |
| 412-578, gnl|xenTro1|scaffold_270 (202051-201872) | |
| 418-576, gnl|bosTau2|chr10 (14750035-14750193) | |
| 418-576, gnl|canFam2|chr8 (6682291-6682454) | |
| 418-576, gnl|danRer3|chr24 (32731641-32731811) | |
| 418-576, gnl|dasNov1|scaffold_17525 (47631-47789) | |
| 418-576, gnl|echTel1|scaffold_309010 (178993-178825) | |
| 418-576, gnl|fr1|chrUn (258657402-258657563) | |
| 418-576, gnl|galGal2|chr18 (382165-382340) | |
| 418-576, gnl|hg17|chr14 (22971684-22971859) | |
| 418-576, gnl|Hg17|chr14 (22971848-22971690) | |
| 418-576, gnl|loxAfr1|scaffold_121 (8587-8409) | |
| 418-576, gnl|mm7|chr14 (49858294-49858457) | |
| 418-576, gnl|Mm7|chr14 (49858446-49858288) | |
| 418-576, gnl|monDom2|scaffold_12 (26246270-26246095) | |
| 418-576, gnl|oryCun1|scaffold_207117 (59007-58844) | |
| 418-576, gnl|panTro1|chr15 (21939598-21939761) | |
| 418-576, gnl|rheMac2|chr7 (86273073-86273213) | |
| 418-576, gnl|rn3|chr15 (33109321-33109487) | |
| 418-576, gnl|tetNig1|chrUn_random (96677199-96677038) | |
| 418-576, gnl|xenTro1|scaffold_53 (38430-38258) | |
| 604-746, gnl|bosTau2|chr19 (22390398-22390257) | |
| 604-746, gnl|Hg17|chr17 (10358169-10358029) | |
| 604-746, gnl|Mm7|chr11 (67364941-67365071) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-277, gnl|bosTau2|chr19 (2435021-2434780) | |
| 36-277, gnl|Hg17|chr17 (10360722-10360481) | |
| 36-277, gnl|Mm7|chr11 (67283410-67283651) | |
| 66-268, gnl|bosTau2|chr10 (14748943-14749142) | |
| 66-268, gnl|canFam2|chr8 (6683162-6683405) | |
| 66-268, gnl|danRer3|chr24 (32732103-32732307) | |
| 66-268, gnl|dasNov1|scaffold_17525 (48462-48699) | |
| 66-268, gnl|echTel1|scaffold_323511 (6901-7117) | |
| 66-268, gnl|fr1|chrUn (127055733-127055499) | |
| 66-268, gnl|galGal2|chr18 (382646-382864) | |
| 66-268, gnl|hg17|chr14 (22972572-22972803) | |
| 66-268, gnl|Hg17|chr14 (22972789-22972590) | |
| 66-268, gnl|loxAfr1|scaffold_121 (6005-5798) | |
| 66-268, gnl|mm7|chr14 (49859112-49859343) | |
| 66-268, gnl|Mm7|chr14 (49859329-49859130) | |
| 66-268, gnl|monDom2|scaffold_12 (26243852-26243621) | |
| 66-268, gnl|oryCun1|scaffold_207117 (57338-57120) | |
| 66-268, gnl|panTro1|chr15 (21940474-21940705) | |
| 66-268, gnl|rheMac2|chr7 (86274328-86274559) | |
| 66-268, gnl|rn3|chr15 (33110078-33110309) | |
| 66-268, gnl|tetNig1|chrUn_random (96676318-96676074) | |
| 66-268, gnl|xenTro1|scaffold_53 (36336-36114) | |
| 412-578, gnl|bosTau2|chr19 (22495958-22495791) | |
| 412-578, gnl|canFam2|chr5 (37715889-37716074) | |
| 412-578, gnl|danRer3|chr5 (27942955-27942769) | |
| 412-578, gnl|dasNov1|scaffold_2441 (10227-10041) | |
| 412-578, gnl|echTel1|scaffold_323511 (5962-6145) | |
| 412-578, gnl|fr1|chrUn (258633604-258633790) | |
| 412-578, gnl|galGal2|chr18 (354746-354928) | |
| 412-578, gnl|hg17|chr17 (10262676-10262861) | |
| 412-578, gnl|Hg17|chr17 (10262854-10262687) | |
| 412-578, gnl|loxAfr1|scaffold_121 (146670-146485) | |
| 412-578, gnl|mm7|chr11 (67361851-67361666) | |
| 412-578, gnl|Mm7|chr11 (67361671-67361841) | |
| 412-578, gnl|monDom2|scaffold_18 (3109567-3109385) | |
| 412-578, gnl|oryCun1|scaffold_208583 (25234-25048) | |
| 412-578, gnl|panTro1|chr19_random (28157541-28157356) | |
| 412-578, gnl|rheMac2|chr16 (10175468-10175652) | |
| 412-578, gnl|rn3|chr10 (53988518-53988330) | |
| 412-578, gnl|tetNig1|chrUn_random (96692452-96692272) | |
| 412-578, gnl|xenTro1|scaffold_270 (202051-201872) | |
| 418-576, gnl|bosTau2|chr10 (14750035-14750193) | |
| 418-576, gnl|canFam2|chr8 (6682291-6682454) | |
| 418-576, gnl|danRer3|chr24 (32731641-32731811) | |
| 418-576, gnl|dasNov1|scaffold_17525 (47631-47789) | |
| 418-576, gnl|echTel1|scaffold_309010 (178993-178825) | |
| 418-576, gnl|fr1|chrUn (258657402-258657563) | |
| 418-576, gnl|galGal2|chr18 (382165-382340) | |
| 418-576, gnl|hg17|chr14 (22971684-22971859) | |
| 418-576, gnl|Hg17|chr14 (22971848-22971690) | |
| 418-576, gnl|loxAfr1|scaffold_121 (8587-8409) | |
| 418-576, gnl|mm7|chr14 (49858294-49858457) | |
| 418-576, gnl|Mm7|chr14 (49858446-49858288) | |
| 418-576, gnl|monDom2|scaffold_12 (26246270-26246095) | |
| 418-576, gnl|oryCun1|scaffold_207117 (59007-58844) | |
| 418-576, gnl|panTro1|chr15 (21939598-21939761) | |
| 418-576, gnl|rheMac2|chr7 (86273073-86273213) | |
| 418-576, gnl|rn3|chr15 (33109321-33109487) | |
| 418-576, gnl|tetNig1|chrUn_random (96677199-96677038) | |
| 418-576, gnl|xenTro1|scaffold_53 (38430-38258) | |
| 604-746, gnl|bosTau2|chr19 (22390398-22390257) | |
| 604-746, gnl|Hg17|chr17 (10358169-10358029) | |
| 604-746, gnl|Mm7|chr11 (67364941-67365071) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| ldo (0.0970026) |