Ss1.1-Mixn-0014c09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAAACCTGTGCGAGCTCTGGCTTTGACAGCTGGAAGGCAGCTGGGAGTGTGGTGGCGCCC CTCACTGCACCCACCTGCCCCATCGTATTGCCAGAGCTGCACCCTCCTTCTGTGTCCTGG AACAGCACCCACTTCTTTAAGGGAAACTGACTCCATCCAATGTCTTCAATCCTGCTGGAA TCATCCCTTCCAAGCCTGAAGGCCCTGTAGCTTCGTTGGTCCTATCTGGTCACAGCAAGT TAGATGTGAAAGAGCTCAGCCTGGGACCCTTCTGTTTATCCCAAAGCTATCCTACCCAGA GCCAGGAGTGACTGAACAGGCACTAACCAAACCTTCCACACTGAGTTCTTTTTCCAGGAC CTTTCTGCGTCTATTTGCTTTCCAGCCCAATGATTTCCTTCTTATCCTATCGTTCTCTCT TTTGCATATCAAGCTTAGATTAGGCCATCCCCAAGGATAGTAAAGTCCTTTGGTGCCCCT CAGTTGACCCCTCCTGACCATGGAACATCATCAACCGGAGCATCCAGCCTCTGGTAAGGC CGGGATTGCAGAAGCAGTCAGCCCCGAAAACCATGAGGTCCCGTCAGAACCAGATGAGCA CCCTCAGGACAAGGATGCCAGAGAGGCCGATGGGGCAGCTGGAGAACAGGAGCCAGAAGA CCAAGCTTCGCTGCTGGCCCAGGGCCATGATAACCTCGAGTCCCCTCCACCTGATGCCAG CTCCTGCCAAACAGGGCCAGCCCAGGGGACGTGGCCTGAGGTCGAGACAGTGGGGGCCTG CTCCAGGCCCCAGGAGCTTCCCCAGTCCCCTAGGGCCCGACAGCCTGAGCTAGACTTCTA CTGTGTGAAGTGGATCCCCTGGAAGGGAGAACGAACACCCATCATCACCCAGAGCACTAA CGGCCCTTGCCCGCTCCTCGCCATCATGAACATCCTCTTTCTCCAGTGGAAGGTGAAGCT GCCACCTCAGAAAGAAGTGATCACGTCAGATGAACTCATGGCCCATCTTGGAGACTGCCT TCTGTCCATCAAGCCCCAGGAGAAATCAGAGGGACTTCAGCTTAATTTTCAGCAGAATGT GGAGGATGCAATGACAGTGCTGCCTAAACTGGCCACAGGTCTGGATGTCAATGTGCGATT CACAGGTGTCTCTGATTTTGAGTATACACCTGAGTGCAGTATCTTTGACCTGCTAGGCAT CCCTCTGTACCATGGCTGGCTTGTTGATCCACAGAGTCCTGAGGCTGTGAGTGCAGTTGG GAAACTGAGTTACAACCAGCTGGTAGAGAAGATCATCACCTGCAAGCACTCCAGTGACAC CAACCTCGTGACAGAAGGCCTAATTGCAGAACAGTTCCTGGAGACCACCGCCGCCCAGCT GACCTACCACGGCCTGTGTGAGCTAACGGCAGCGGCCAAGGAGGGCGAACTTAGCGTCTT TTTCCGAAACAACCACTTTAGCACTATGATTAAGCACAAGAGTCACTTGTACCTACTGGT CACTGACCAGGGCTTTCTACAGGAAGAGCAAGTGGTGTGGGAGAGCCTGCACAACGTGGA TGGAGACAGCTGCTTTTGTGACTCTGACTTTCACCTAAGTCATTCCCTGGGCAAGGGCCC TGGAGCAGAAGGTGGGCGTGGCTCCCCAGAAAATCAGCGGCAGGTGGACCAGGACTACCT GATTGCCTTGTCCCTGCAGCAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAAACCTGTGCGAGCTCTGGCTTTGACAGCTGGAAGGCAGCTGGGAGTGTGGTGGCGCCC CTCACTGCACCCACCTGCCCCATCGTATTGCCAGAGCTGCACCCTCCTTCTGTGTCCTGG AACAGCACCCACTTCTTTAAGGGAAACTGACTCCATCCAATGTCTTCAATCCTGCTGGAA TCATCCCTTCCAAGCCTGAAGGCCCTGTAGCTTCGTTGGTCCTATCTGGTCACAGCAAGT TAGATGTGAAAGAGCTCAGCCTGGGACCCTTCTGTTTATCCCAAAGCTATCCTACCCAGA GCCAGGAGTGACTGAACAGGCACTAACCAAACCTTCCACACTGAGTTCTTTTTCCAGGAC CTTTCTGCGTCTATTTGCTTTCCAGCCCAATGATTTCCTTCTTATCCTATCGTTCTCTCT TTTGCATATCAAGCTTAGATTAGGCCATCCCCAAGGATAGTAAAGTCCTTTGGTGCCCCT CAGTTGACCCCTCCTGACCATGGAACATCATCAACCGGAGCATCCAGCCTCTGGTAAGGC CGGGATTGCAGAAGCAGTCAGCCCCGAAAACCATGAGGTCCCGTCAGAACCAGATGAGCA CCCTCAGGACAAGGATGCCAGAGAGGCCGATGGGGCAGCTGGAGAACAGGAGCCAGAAGA CCAAGCTTCGCTGCTGGCCCAGGGCCATGATAACCTCGAGTCCCCTCCACCTGATGCCAG CTCCTGCCAAACAGGGCCAGCCCAGGGGACGTGGCCTGAGGTCGAGACAGTGGGGGCCTG CTCCAGGCCCCAGGAGCTTCCCCAGTCCCCTAGGGCCCGACAGCCTGAGCTAGACTTCTA CTGTGTGAAGTGGATCCCCTGGAAGGGAGAACGAACACCCATCATCACCCAGAGCACTAA CGGCCCTTGCCCGCTCCTCGCCATCATGAACATCCTCTTTCTCCAGTGGAAGGTGAAGCT GCCACCTCAGAAAGAAGTGATCACGTCAGATGAACTCATGGCCCATCTTGGAGACTGCCT TCTGTCCATCAAGCCCCAGGAGAAATCAGAGGGACTTCAGCTTAATTTTCAGCAGAATGT GGAGGATGCAATGACAGTGCTGCCTAAACTGGCCACAGGTCTGGATGTCAATGTGCGATT CACAGGTGTCTCTGATTTTGAGTATACACCTGAGTGCAGTATCTTTGACCTGCTAGGCAT CCCTCTGTACCATGGCTGGCTTGTTGATCCACAGAGTCCTGAGGCTGTGAGTGCAGTTGG GAAACTGAGTTACAACCAGCTGGTAGAGAAGATCATCACCTGCAAGCACTCCAGTGACAC CAACCTCGTGACAGAAGGCCTAATTGCAGAACAGTTCCTGGAGACCACCGCCGCCCAGCT GACCTACCACGGCCTGTGTGAGCTAACGGCAGCGGCCAAGGAGGGCGAACTTAGCGTCTT TTTCCGAAACAACCACTTTAGCACTATGATTAAGCACAAGAGTCACTTGTACCTACTGGT CACTGACCAGGGCTTTCTACAGGAAGAGCAAGTGGTGTGGGAGAGCCTGCACAACGTGGA TGGAGACAGCTGCTTTTGTGACTCTGACTTTCACCTAAGTCATTCCCTGGGCAAGGGCCC TGGAGCAGAAGGTGGGCGTGGCTCCCCAGAAAATCAGCGGCAGGTGGACCAGGACTACCT GATTGCCTTGTCCCTGCAGCAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 491-610, - strand, RNAz p=0.786417 | |
| 691-890, + strand, RNAz p=0.881158 | |
| 1474-1673, + strand, RNAz p=0.64776 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 491-610, - strand, RNAz p=0.786417 | |
| 691-890, + strand, RNAz p=0.881158 | |
| 1474-1673, + strand, RNAz p=0.64776 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK125959, + |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 136-954, gnl|bosTau2|chr3 (16554122-16554929) | |
| 136-954, gnl|Hg17|chr1 (147788523-147787712) | |
| 136-954, gnl|Mm7|chr3 (95161588-95162351) | |
| 1073-1234, gnl|bosTau2|chr3 (16556801-16556962) | |
| 1073-1234, gnl|canFam2|chr17 (63176551-63176691) | |
| 1073-1234, gnl|danRer3|chr19 (2111405-2111277) | |
| 1073-1234, gnl|echTel1|scaffold_269456 (7296-7157) | |
| 1073-1234, gnl|fr1|chrUn (81412278-81412406) | |
| 1073-1234, gnl|hg17|chr1 (147785993-147786133) | |
| 1073-1234, gnl|Hg17|chr1 (147786167-147786006) | |
| 1073-1234, gnl|loxAfr1|scaffold_493 (68713-68572) | |
| 1073-1234, gnl|mm7|chr3 (95166247-95166107) | |
| 1073-1234, gnl|Mm7|chr3 (95166071-95166232) | |
| 1073-1234, gnl|monDom2|scaffold_44 (4173051-4173191) | |
| 1073-1234, gnl|oryCun1|scaffold_206144 (477-617) | |
| 1073-1234, gnl|panTro1|chr1 (129520351-129520491) | |
| 1073-1234, gnl|rheMac2|chr1 (129410206-129410346) | |
| 1073-1234, gnl|rn3|chr2 (190165403-190165263) | |
| 1073-1234, gnl|tetNig1|chrUn_random (10356995-10356869) | |
| 1073-1234, gnl|xenTro1|scaffold_96 (1071125-1071256) | |
| 1474-1673, gnl|bosTau2|chr3 (16559434-16559632) | |
| 1474-1673, gnl|Hg17|chr1 (147783828-147783630) | |
| 1474-1673, gnl|Mm7|chr3 (95168738-95168936) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 136-954, gnl|bosTau2|chr3 (16554122-16554929) | |
| 136-954, gnl|Hg17|chr1 (147788523-147787712) | |
| 136-954, gnl|Mm7|chr3 (95161588-95162351) | |
| 1073-1234, gnl|bosTau2|chr3 (16556801-16556962) | |
| 1073-1234, gnl|canFam2|chr17 (63176551-63176691) | |
| 1073-1234, gnl|danRer3|chr19 (2111405-2111277) | |
| 1073-1234, gnl|echTel1|scaffold_269456 (7296-7157) | |
| 1073-1234, gnl|fr1|chrUn (81412278-81412406) | |
| 1073-1234, gnl|hg17|chr1 (147785993-147786133) | |
| 1073-1234, gnl|Hg17|chr1 (147786167-147786006) | |
| 1073-1234, gnl|loxAfr1|scaffold_493 (68713-68572) | |
| 1073-1234, gnl|mm7|chr3 (95166247-95166107) | |
| 1073-1234, gnl|Mm7|chr3 (95166071-95166232) | |
| 1073-1234, gnl|monDom2|scaffold_44 (4173051-4173191) | |
| 1073-1234, gnl|oryCun1|scaffold_206144 (477-617) | |
| 1073-1234, gnl|panTro1|chr1 (129520351-129520491) | |
| 1073-1234, gnl|rheMac2|chr1 (129410206-129410346) | |
| 1073-1234, gnl|rn3|chr2 (190165403-190165263) | |
| 1073-1234, gnl|tetNig1|chrUn_random (10356995-10356869) | |
| 1073-1234, gnl|xenTro1|scaffold_96 (1071125-1071256) | |
| 1474-1673, gnl|bosTau2|chr3 (16559434-16559632) | |
| 1474-1673, gnl|Hg17|chr1 (147783828-147783630) | |
| 1474-1673, gnl|Mm7|chr3 (95168738-95168936) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.264306) | |
| mcp (0.170648) |