Non-Coding RNA Search

Ss1.1-Mixn-0014c19.5

Sequence:


               
               AGGGACACTGGCAGCTGTGGAAATGACAGACAAGTACTGCCCTAGAGCTATGGGTAAGGG
CAAACTGGCCCCTTCCTGCTTCACCCTGATCCATTCAGCAAGTGGTGAGGCAACAGAAAG
GCCAGACTCGCCTGCGTTCCTCTCTAGTCTTTCTGCCCAAACCTGGAGAAGCAGGAAAGG
GAGCCATTTAGACTGCACTTTTTTTGTTTTCCGTTTACTGTTTACATTTTGCACTTGGGA
GGAGGGAGGCTAAGGCTGGGTCCTCCCCTCTGAGGTTTCTCAGGTGGCAATATAATTTTT
GTCCCTCCATTTCTCTGCCTAAGCCCTGGCTTAGGAGCTAGGGGGAGGCCAGGAGATTGT
GAAAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGTTGTTTTAAGTCCCTTGCTTTTA
TCTTGGTGCCTGATTGGGGTGGGGACTGTCATATTGTAACCCCTGTGAAAAAACCCTGAA
ATATAACCACTCCATGCAGGCCCAGGGCCGGGAGGGGCGCGGTCCCGCCAGACGGACGAC
TCCAGGACCCCTGCCCACCTCGTCACCCCTGGGGCCGCGCACAGGGCCTCGGTGCTGCTG
AGCACGGACCTTCCCGGAAGCCGGCGGTCCGGCAGCGGCTCCCCCGCCGAGTGGAAGCTG
CGGAGGATGGAAGTGGCTCCCCGAGATCACGGTTCACTCTGACGTTAGACAATCTCACGG
GGGTGTCATGCCCGCCAAGAAGACAAAGGGCACCCTCCTGGCCCCAGGCAGGCCAGCCCC
GTATTAAAGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGACACTGGCAGCTGTGGAAATGACAGACAAGTACTGCCCTAGAGCTATGGGTAAGGG
CAAACTGGCCCCTTCCTGCTTCACCCTGATCCATTCAGCAAGTGGTGAGGCAACAGAAAG
GCCAGACTCGCCTGCGTTCCTCTCTAGTCTTTCTGCCCAAACCTGGAGAAGCAGGAAAGG
GAGCCATTTAGACTGCACTTTTTTTGTTTTCCGTTTACTGTTTACATTTTGCACTTGGGA
GGAGGGAGGCTAAGGCTGGGTCCTCCCCTCTGAGGTTTCTCAGGTGGCAATATAATTTTT
GTCCCTCCATTTCTCTGCCTAAGCCCTGGCTTAGGAGCTAGGGGGAGGCCAGGAGATTGT
GAAAGCATGTGATGGCTCAGGCTGAAGAACTGGGGTGTTGTTTTAAGTCCCTTGCTTTTA
TCTTGGTGCCTGATTGGGGTGGGGACTGTCATATTGTAACCCCTGTGAAAAAACCCTGAA
ATATAACCACTCCATGCAGGCCCAGGGCCGGGAGGGGCGCGGTCCCGCCAGACGGACGAC
TCCAGGACCCCTGCCCACCTCGTCACCCCTGGGGCCGCGCACAGGGCCTCGGTGCTGCTG
AGCACGGACCTTCCCGGAAGCCGGCGGTCCGGCAGCGGCTCCCCCGCCGAGTGGAAGCTG
CGGAGGATGGAAGTGGCTCCCCGAGATCACGGTTCACTCTGACGTTAGACAATCTCACGG
GGGTGTCATGCCCGCCAAGAAGACAAAGGGCACCCTCCTGGCCCCAGGCAGGCCAGCCCC
GTATTAAAGTTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               77-176, - strand, RNAz p=0.957328
               

               
               249-435, + strand, RNAz p=0.978886

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-176, - strand, RNAz p=0.957328
               

               
               249-435, + strand, RNAz p=0.978886

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006301, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006301, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-505, gnl|bosTau2|chr5 (18970111-18970617)
               

               
               1-505, gnl|Hg17|chr12 (52161066-52160542)
               

               
               1-505, gnl|Mm7|chr15 (102486091-102485600)
               


               
               511-792, gnl|bosTau2|chr19 (44750246-44750541)
               

               
               511-792, gnl|Hg17|chr17 (76588125-76588514)
               

               
               511-792, gnl|Mm7|chr11 (120028248-120028565)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-505, gnl|bosTau2|chr5 (18970111-18970617)
               

               
               1-505, gnl|Hg17|chr12 (52161066-52160542)
               

               
               1-505, gnl|Mm7|chr15 (102486091-102485600)
               


               
               511-792, gnl|bosTau2|chr19 (44750246-44750541)
               

               
               511-792, gnl|Hg17|chr17 (76588125-76588514)
               

               
               511-792, gnl|Mm7|chr11 (120028248-120028565)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ebs (0.118301)

	77-176, - strand, RNAz p=0.957328
	249-435, + strand, RNAz p=0.978886

	1-505, gnl\|bosTau2\|chr5 (18970111-18970617)
	1-505, gnl\|Hg17\|chr12 (52161066-52160542)
	1-505, gnl\|Mm7\|chr15 (102486091-102485600)

	511-792, gnl\|bosTau2\|chr19 (44750246-44750541)
	511-792, gnl\|Hg17\|chr17 (76588125-76588514)
	511-792, gnl\|Mm7\|chr11 (120028248-120028565)