Ss1.1-Mixn-0014d15.5
|
GGGGCCCAGCCTGCCCCGCCGCCTTGCGTCCTTACTGCCAATACACGTGGGAACGCCTTC
GGGAACTGTGGGCGAAGTCCTGGTGGCAGCTACGTGTCCTGTGCCGCTAAAGATGCCATG
TGTGGGCAGCTTCAGTGCCAGGTGGGGAGGGCCCAGCCTCTGCTGGGCTCAGCCCGGGAT
CTGCACTGGGAGGTACTGGAAGCCAATGGGACCCAGCTCAAGTTGAACTGCAGCCGGGTA
CACCTGGACCTGGGCAACGACGTGGCTCAGCCCCTCCTGAGTTTGCCTGGTACAGCCTGT
GGCCCTGGCCTGGTGTGCCTCGACCACCGATGCCAGCCCGTGGAAATCCTAGGAGCCCAG
GAATGTCGAAGCAAATGCCATGGGCATGGGGTCTGCGACAGCAACAGACAGTGCCACTGT
GAGGAGGGCTGGGCACCCCCGGACTGCATCACCCACATCAGAGCCACCAGCTCCCTGACC
ACAGGACTGCCCCTCAGCCTCCTGTTGTTGCTAGTCCTGGTACTGCTTGGTGCCAGCTAC
TGGCACCGTGCCCGCCTGCGCCAGCGACTCTGCCAGCTCAAGGGACCCAGCTGCCAATAC
AGGGCAGCCCAGTCGGGTCCCCCGGAACGCCCAGGACCCCCACAGAGGGCCCCTCTGATG
CCAGGTGCCAAGCCTCAGGGGCCTACCAAGCCCCCACCCCCGAGAAAGCCACTGCCTGCT
GACCCCCAGGGCGCTGCGCTGGCTGACCGACCCAATCCCCCCACCCGCCCTCTGCCCGCT
GACCCGGTGTTGAGGCGCCCGAAGCCTCAGGGGCCTACCAAGCCCCCACCCCCGAGAAAG
CCACTGCCTGCTGACCCCCAGGGCTGGCGCCCTTCAGGTGACCTGCCCGGCCCTGAAGCT
GGAATCCCGCCCCCGGTGGTACCCTCCAGGCCTGCGCCGCCACCCCCAGCAATGTCCTCC
CTCTACCTCTGACCTCTTCTGAGGTTCTGCTGCCTCCAACCTGGACTTAGGACTTCAACA
GGCGGACCCGACCGCCGGAGTCCCCCTCGACGACTGAAGTAGCTGGAGCCTGGACGCTAC
GGAGCAGGCATCCTAAGACCAGGCACCTACTTGCACTGTCGAGCAGCACCCTGGGGACCC
ACCCATGCAGTGGCAGCTGGTGGTTGGGGAGGGGCTGGGCGCTGGACGGGGCTGAGGGAG
GTGCACGTAGCCTGTCTCTGCTCAGCCGCAATAAACGTAAGGTCTTGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGGCCCAGCCTGCCCCGCCGCCTTGCGTCCTTACTGCCAATACACGTGGGAACGCCTTC
GGGAACTGTGGGCGAAGTCCTGGTGGCAGCTACGTGTCCTGTGCCGCTAAAGATGCCATG
TGTGGGCAGCTTCAGTGCCAGGTGGGGAGGGCCCAGCCTCTGCTGGGCTCAGCCCGGGAT
CTGCACTGGGAGGTACTGGAAGCCAATGGGACCCAGCTCAAGTTGAACTGCAGCCGGGTA
CACCTGGACCTGGGCAACGACGTGGCTCAGCCCCTCCTGAGTTTGCCTGGTACAGCCTGT
GGCCCTGGCCTGGTGTGCCTCGACCACCGATGCCAGCCCGTGGAAATCCTAGGAGCCCAG
GAATGTCGAAGCAAATGCCATGGGCATGGGGTCTGCGACAGCAACAGACAGTGCCACTGT
GAGGAGGGCTGGGCACCCCCGGACTGCATCACCCACATCAGAGCCACCAGCTCCCTGACC
ACAGGACTGCCCCTCAGCCTCCTGTTGTTGCTAGTCCTGGTACTGCTTGGTGCCAGCTAC
TGGCACCGTGCCCGCCTGCGCCAGCGACTCTGCCAGCTCAAGGGACCCAGCTGCCAATAC
AGGGCAGCCCAGTCGGGTCCCCCGGAACGCCCAGGACCCCCACAGAGGGCCCCTCTGATG
CCAGGTGCCAAGCCTCAGGGGCCTACCAAGCCCCCACCCCCGAGAAAGCCACTGCCTGCT
GACCCCCAGGGCGCTGCGCTGGCTGACCGACCCAATCCCCCCACCCGCCCTCTGCCCGCT
GACCCGGTGTTGAGGCGCCCGAAGCCTCAGGGGCCTACCAAGCCCCCACCCCCGAGAAAG
CCACTGCCTGCTGACCCCCAGGGCTGGCGCCCTTCAGGTGACCTGCCCGGCCCTGAAGCT
GGAATCCCGCCCCCGGTGGTACCCTCCAGGCCTGCGCCGCCACCCCCAGCAATGTCCTCC
CTCTACCTCTGACCTCTTCTGAGGTTCTGCTGCCTCCAACCTGGACTTAGGACTTCAACA
GGCGGACCCGACCGCCGGAGTCCCCCTCGACGACTGAAGTAGCTGGAGCCTGGACGCTAC
GGAGCAGGCATCCTAAGACCAGGCACCTACTTGCACTGTCGAGCAGCACCCTGGGGACCC
ACCCATGCAGTGGCAGCTGGTGGTTGGGGAGGGGCTGGGCGCTGGACGGGGCTGAGGGAG
GTGCACGTAGCCTGTCTCTGCTCAGCCGCAATAAACGTAAGGTCTTGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
111-318, gnl|bosTau2|chr3 (9147147-9147354) |
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111-318, gnl|Hg17|chr1 (151843795-151843996) |
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111-318, gnl|Mm7|chr3 (89470247-89470046) |
| |
|
459-603, gnl|bosTau2|chr3 (9148679-9148823) |
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459-603, gnl|Hg17|chr1 (151845749-151845893) |
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459-603, gnl|Mm7|chr3 (89468744-89468600) |
| |
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926-1248, gnl|bosTau2|chr3 (9150935-9151257) |
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926-1248, gnl|canFam2|chr7 (45406129-45405898) |
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926-1248, gnl|dasNov1|scaffold_13326 (4813-4580) |
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926-1248, gnl|hg17|chr1 (151847969-151848195) |
|
926-1248, gnl|Hg17|chr1 (151848005-151848317) |
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926-1248, gnl|loxAfr1|scaffold_88266 (7007-6753) |
|
926-1248, gnl|mm7|chr3 (89466659-89466441) |
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926-1248, gnl|Mm7|chr3 (89466621-89466310) |
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926-1248, gnl|monDom2|scaffold_59 (2731594-2731304) |
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926-1248, gnl|panTro1|chr1 (133837407-133837633) |
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926-1248, gnl|rheMac2|chr1 (133607399-133607628) |
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926-1248, gnl|rn3|chr2 (181477633-181477407) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
111-318, gnl|bosTau2|chr3 (9147147-9147354) |
|
111-318, gnl|Hg17|chr1 (151843795-151843996) |
|
111-318, gnl|Mm7|chr3 (89470247-89470046) |
| |
|
459-603, gnl|bosTau2|chr3 (9148679-9148823) |
|
459-603, gnl|Hg17|chr1 (151845749-151845893) |
|
459-603, gnl|Mm7|chr3 (89468744-89468600) |
| |
|
926-1248, gnl|bosTau2|chr3 (9150935-9151257) |
|
926-1248, gnl|canFam2|chr7 (45406129-45405898) |
|
926-1248, gnl|dasNov1|scaffold_13326 (4813-4580) |
|
926-1248, gnl|hg17|chr1 (151847969-151848195) |
|
926-1248, gnl|Hg17|chr1 (151848005-151848317) |
|
926-1248, gnl|loxAfr1|scaffold_88266 (7007-6753) |
|
926-1248, gnl|mm7|chr3 (89466659-89466441) |
|
926-1248, gnl|Mm7|chr3 (89466621-89466310) |
|
926-1248, gnl|monDom2|scaffold_59 (2731594-2731304) |
|
926-1248, gnl|panTro1|chr1 (133837407-133837633) |
|
926-1248, gnl|rheMac2|chr1 (133607399-133607628) |
|
926-1248, gnl|rn3|chr2 (181477633-181477407) |
|
ton (0.351) |
|
ebs (0.236602) |
|
nep (0.183925) |
|
mcp (0.170648) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
eru (0.120048) |
|
ton (0.351) |
|
ebs (0.236602) |
|
nep (0.183925) |
|
mcp (0.170648) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
eru (0.120048) |
