Ss1.1-Mixn-0014d22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGGATCACAGAGGTGAAGAGATTATAAATCTTCTATTGAGTGAAAATATTTTTCTTAAG GTTGCATATACGCCAAGAAAAAATCCCAAATGTTTTTATATTTTGCCTAAATACAAAGTT TAAACAAGAAGTTTCCACGGAAGCTCCGCGGCCGTCACCATGTTCTGGAAGTTTGACCTG AACACCACGTCGCACATCGACAAGCTGCTCGATCAGGAGGACGTGATGTTGCGAGAGCTA ATGGACGAAGATGACATCTTGCAGGAGTGCAAGGCGCAGAATCGGCGGCTGCTGGACTTC CTCTGCCGGCCTCAGTGTATGGAGGAGCTGGTGAACCTGGTCACGCAGGACCCGGCCCTG GACGTGGAGGAGAAGGTCCGCTTCAAATACCCAAACACAGCCTGTGAGCTGCTGACCTGT GACGTGCCTCAGATCAACGACAGGCTGGGAGGGGACGAGACCCTGCTGAACCTTCTTTAC GACTTCCTGGACCGGGAACCGCCCCTCAACCCTCTGCTCGCCAGTTTTTTCAGCAAGACC ATCGGCAACCTCATTGCCAGGAAAACTGAGCAGGTAATCCACGCCCAGGGTCTGGGATGG AAGTTCATCAGCCTGGTGCTGAAGCACATCGGCACCTCGGCCCTCATGGACCTGCTGCTG CGCCTGGTTAGCTGCGTGGAGCCCGCTGGGCTCCGGCACGAGGTCCTGCAGTGGCTCAAC GAGGAGAAGGTCATCCAGCGGCTTGTGGAGCTGATCCATCCGAGCCAGGACGAAGACAGT CAGTCCAATGCGTCCCAGACGCTCTGTGACATCGTCAGGCTGGGCAGAGAGCAGGGCGGC CAGCGGCAGGAGGCTCCGGAGCCAGACCCCCTCCTCACGGTGCTGGAGTCGCAGGACTGT GTGGAGCAGCTGCTGAGGAACATGTTTGACGGAGCCCAGACCGAGGGCTGCCTCGTCAGC GGGACGCAGGTGCTGCTGACCCTGCTGGAGACCAGGCGGCATGGGACAGAGGGCTTGGTG GACTCCTGCTCTCAGGGACTGGACAGGCTGTGTGCCGTCAGCAGCGGTGTCCTGCTCGGC ATTGAGCCACGGCTGAAGGACTTCCACCAGCTTCTGCTCAGCCCGCCAAAGAAAAAAGCG ATCCTGACCACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGGATCACAGAGGTGAAGAGATTATAAATCTTCTATTGAGTGAAAATATTTTTCTTAAG GTTGCATATACGCCAAGAAAAAATCCCAAATGTTTTTATATTTTGCCTAAATACAAAGTT TAAACAAGAAGTTTCCACGGAAGCTCCGCGGCCGTCACCATGTTCTGGAAGTTTGACCTG AACACCACGTCGCACATCGACAAGCTGCTCGATCAGGAGGACGTGATGTTGCGAGAGCTA ATGGACGAAGATGACATCTTGCAGGAGTGCAAGGCGCAGAATCGGCGGCTGCTGGACTTC CTCTGCCGGCCTCAGTGTATGGAGGAGCTGGTGAACCTGGTCACGCAGGACCCGGCCCTG GACGTGGAGGAGAAGGTCCGCTTCAAATACCCAAACACAGCCTGTGAGCTGCTGACCTGT GACGTGCCTCAGATCAACGACAGGCTGGGAGGGGACGAGACCCTGCTGAACCTTCTTTAC GACTTCCTGGACCGGGAACCGCCCCTCAACCCTCTGCTCGCCAGTTTTTTCAGCAAGACC ATCGGCAACCTCATTGCCAGGAAAACTGAGCAGGTAATCCACGCCCAGGGTCTGGGATGG AAGTTCATCAGCCTGGTGCTGAAGCACATCGGCACCTCGGCCCTCATGGACCTGCTGCTG CGCCTGGTTAGCTGCGTGGAGCCCGCTGGGCTCCGGCACGAGGTCCTGCAGTGGCTCAAC GAGGAGAAGGTCATCCAGCGGCTTGTGGAGCTGATCCATCCGAGCCAGGACGAAGACAGT CAGTCCAATGCGTCCCAGACGCTCTGTGACATCGTCAGGCTGGGCAGAGAGCAGGGCGGC CAGCGGCAGGAGGCTCCGGAGCCAGACCCCCTCCTCACGGTGCTGGAGTCGCAGGACTGT GTGGAGCAGCTGCTGAGGAACATGTTTGACGGAGCCCAGACCGAGGGCTGCCTCGTCAGC GGGACGCAGGTGCTGCTGACCCTGCTGGAGACCAGGCGGCATGGGACAGAGGGCTTGGTG GACTCCTGCTCTCAGGGACTGGACAGGCTGTGTGCCGTCAGCAGCGGTGTCCTGCTCGGC ATTGAGCCACGGCTGAAGGACTTCCACCAGCTTCTGCTCAGCCCGCCAAAGAAAAAAGCG ATCCTGACCACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 30-143, - strand, RNAz p=0.791263 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 30-143, - strand, RNAz p=0.791263 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 12-143, gnl|bosTau2|chr5 (75905617-75905488) | |
| 12-143, gnl|canFam2|chr10 (19890137-19889988) | |
| 12-143, gnl|dasNov1|scaffold_119550 (795-949) | |
| 12-143, gnl|echTel1|scaffold_291050 (13233-13102) | |
| 12-143, gnl|hg17|chr22 (49100535-49100686) | |
| 12-143, gnl|Hg17|chr22 (49100591-49100723) | |
| 12-143, gnl|loxAfr1|scaffold_167696 (724-568) | |
| 12-143, gnl|mm7|chr15 (89324988-89325130) | |
| 12-143, gnl|Mm7|chr15 (89325037-89325167) | |
| 12-143, gnl|oryCun1|scaffold_200643 (5698-5849) | |
| 12-143, gnl|panTro1|chr23 (49576396-49576547) | |
| 12-143, gnl|rheMac2|chr10 (94397198-94397349) | |
| 12-143, gnl|rn3|chr7 (127572757-127572894) | |
| 158-386, gnl|bosTau2|chr18 (52966810-52967038) | |
| 158-386, gnl|Hg17|chr19 (60450285-60450057) | |
| 158-386, gnl|Mm7|chr7 (4220300-4220072) | |
| 388-575, gnl|bosTau2|chr18 (52968079-52968266) | |
| 388-575, gnl|canFam2|chr1 (105491821-105491615) | |
| 388-575, gnl|danRer3|chr7 (4027880-4028081) | |
| 388-575, gnl|dasNov1|scaffold_26336 (5988-6168) | |
| 388-575, gnl|echTel1|scaffold_174402 (685-494) | |
| 388-575, gnl|fr1|chrUn (254934485-254934698) | |
| 388-575, gnl|galGal2|chrUn (132270167-132269958) | |
| 388-575, gnl|hg17|chr19 (60448660-60448873) | |
| 388-575, gnl|Hg17|chr19 (60448857-60448670) | |
| 388-575, gnl|loxAfr1|scaffold_26146 (20373-20577) | |
| 388-575, gnl|mm7|chr7 (4216726-4216933) | |
| 388-575, gnl|Mm7|chr7 (4216917-4216730) | |
| 388-575, gnl|monDom2|scaffold_119 (857465-857263) | |
| 388-575, gnl|oryCun1|scaffold_189151 (1284-1077) | |
| 388-575, gnl|panTro1|chr20 (57870391-57870604) | |
| 388-575, gnl|rheMac2|chr19 (61263427-61263640) | |
| 388-575, gnl|rn3|chr1 (67999756-67999549) | |
| 388-575, gnl|tetNig1|chrUn_random (17985017-17984826) | |
| 388-575, gnl|xenTro1|scaffold_832 (502715-502516) | |
| 601-710, gnl|bosTau2|chr5 (75857483-75857374) | |
| 601-710, gnl|Hg17|chr22 (49143152-49143261) | |
| 601-710, gnl|Mm7|chr15 (89341972-89342081) | |
| 778-918, gnl|bosTau2|chr5 (75854961-75854824) | |
| 778-918, gnl|canFam2|chr10 (19850940-19850838) | |
| 778-918, gnl|danRer3|chr4 (21280712-21280814) | |
| 778-918, gnl|dasNov1|scaffold_20365 (9513-9411) | |
| 778-918, gnl|echTel1|scaffold_282638 (3174-3070) | |
| 778-918, gnl|fr1|chrUn (21583609-21583711) | |
| 778-918, gnl|galGal2|chrUn (132277716-132277818) | |
| 778-918, gnl|hg17|chr22 (49147436-49147538) | |
| 778-918, gnl|Hg17|chr22 (49147440-49147582) | |
| 778-918, gnl|loxAfr1|scaffold_26146 (7423-7323) | |
| 778-918, gnl|mm7|chr15 (89348004-89348106) | |
| 778-918, gnl|Mm7|chr15 (89348008-89348173) | |
| 778-918, gnl|monDom2|scaffold_119 (880166-880268) | |
| 778-918, gnl|oryCun1|scaffold_150334 (3136-3238) | |
| 778-918, gnl|panTro1|chr23_random (16472082-16472184) | |
| 778-918, gnl|rheMac2|chr10 (94441720-94441822) | |
| 778-918, gnl|rn3|chr7 (127595244-127595346) | |
| 778-918, gnl|tetNig1|chr13 (3296521-3296419) | |
| 778-918, gnl|xenTro1|scaffold_534 (696037-696139) | |
| 1004-1131, gnl|bosTau2|chr5 (75853457-75853330) | |
| 1004-1131, gnl|Hg17|chr22 (49150826-49150953) | |
| 1004-1131, gnl|Mm7|chr15 (89351381-89351508) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-143, gnl|bosTau2|chr5 (75905617-75905488) | |
| 12-143, gnl|canFam2|chr10 (19890137-19889988) | |
| 12-143, gnl|dasNov1|scaffold_119550 (795-949) | |
| 12-143, gnl|echTel1|scaffold_291050 (13233-13102) | |
| 12-143, gnl|hg17|chr22 (49100535-49100686) | |
| 12-143, gnl|Hg17|chr22 (49100591-49100723) | |
| 12-143, gnl|loxAfr1|scaffold_167696 (724-568) | |
| 12-143, gnl|mm7|chr15 (89324988-89325130) | |
| 12-143, gnl|Mm7|chr15 (89325037-89325167) | |
| 12-143, gnl|oryCun1|scaffold_200643 (5698-5849) | |
| 12-143, gnl|panTro1|chr23 (49576396-49576547) | |
| 12-143, gnl|rheMac2|chr10 (94397198-94397349) | |
| 12-143, gnl|rn3|chr7 (127572757-127572894) | |
| 158-386, gnl|bosTau2|chr18 (52966810-52967038) | |
| 158-386, gnl|Hg17|chr19 (60450285-60450057) | |
| 158-386, gnl|Mm7|chr7 (4220300-4220072) | |
| 388-575, gnl|bosTau2|chr18 (52968079-52968266) | |
| 388-575, gnl|canFam2|chr1 (105491821-105491615) | |
| 388-575, gnl|danRer3|chr7 (4027880-4028081) | |
| 388-575, gnl|dasNov1|scaffold_26336 (5988-6168) | |
| 388-575, gnl|echTel1|scaffold_174402 (685-494) | |
| 388-575, gnl|fr1|chrUn (254934485-254934698) | |
| 388-575, gnl|galGal2|chrUn (132270167-132269958) | |
| 388-575, gnl|hg17|chr19 (60448660-60448873) | |
| 388-575, gnl|Hg17|chr19 (60448857-60448670) | |
| 388-575, gnl|loxAfr1|scaffold_26146 (20373-20577) | |
| 388-575, gnl|mm7|chr7 (4216726-4216933) | |
| 388-575, gnl|Mm7|chr7 (4216917-4216730) | |
| 388-575, gnl|monDom2|scaffold_119 (857465-857263) | |
| 388-575, gnl|oryCun1|scaffold_189151 (1284-1077) | |
| 388-575, gnl|panTro1|chr20 (57870391-57870604) | |
| 388-575, gnl|rheMac2|chr19 (61263427-61263640) | |
| 388-575, gnl|rn3|chr1 (67999756-67999549) | |
| 388-575, gnl|tetNig1|chrUn_random (17985017-17984826) | |
| 388-575, gnl|xenTro1|scaffold_832 (502715-502516) | |
| 601-710, gnl|bosTau2|chr5 (75857483-75857374) | |
| 601-710, gnl|Hg17|chr22 (49143152-49143261) | |
| 601-710, gnl|Mm7|chr15 (89341972-89342081) | |
| 778-918, gnl|bosTau2|chr5 (75854961-75854824) | |
| 778-918, gnl|canFam2|chr10 (19850940-19850838) | |
| 778-918, gnl|danRer3|chr4 (21280712-21280814) | |
| 778-918, gnl|dasNov1|scaffold_20365 (9513-9411) | |
| 778-918, gnl|echTel1|scaffold_282638 (3174-3070) | |
| 778-918, gnl|fr1|chrUn (21583609-21583711) | |
| 778-918, gnl|galGal2|chrUn (132277716-132277818) | |
| 778-918, gnl|hg17|chr22 (49147436-49147538) | |
| 778-918, gnl|Hg17|chr22 (49147440-49147582) | |
| 778-918, gnl|loxAfr1|scaffold_26146 (7423-7323) | |
| 778-918, gnl|mm7|chr15 (89348004-89348106) | |
| 778-918, gnl|Mm7|chr15 (89348008-89348173) | |
| 778-918, gnl|monDom2|scaffold_119 (880166-880268) | |
| 778-918, gnl|oryCun1|scaffold_150334 (3136-3238) | |
| 778-918, gnl|panTro1|chr23_random (16472082-16472184) | |
| 778-918, gnl|rheMac2|chr10 (94441720-94441822) | |
| 778-918, gnl|rn3|chr7 (127595244-127595346) | |
| 778-918, gnl|tetNig1|chr13 (3296521-3296419) | |
| 778-918, gnl|xenTro1|scaffold_534 (696037-696139) | |
| 1004-1131, gnl|bosTau2|chr5 (75853457-75853330) | |
| 1004-1131, gnl|Hg17|chr22 (49150826-49150953) | |
| 1004-1131, gnl|Mm7|chr15 (89351381-89351508) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |