Ss1.1-Mixn-0014f15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGGCAGCTAGGAGGCTTATTCGATCACCACGTCCAAAGGGCTGTATGCGACTCGCGG GCCAAGTATCGAGAGGGGCGCCGCCCTCGCGCTGTCAGGGTTTACACGATCAATTTGGAA TCTCGGTACTTATTAATACAAGGAGTTCCTGCAGTCGGAGCCATGAAGGAATTAGTTGAG CGATTTGCTTTGTATGGTGCAATTGAACAGTATAATGCTCTAGATGAATACCCAGCAGAA GACTTTACAGAAGTTTATCTTATTAAATTTCTCAATTTACAAAGTGCAAGGATAGCCAAG AGAAAAATGGATGAACAGAGTTTCTTTGGTGGATTGCTTCATGTGTGCTATGCTCCAGAA TTTGAGACAGTTGAAGAAACCAGAAAAAAATTACAGGAGAGGAATGCCTATATAGCAAGA ACTACTAAGAATAAAGATCATTACATGACAAAGAAGAAACTGGATACAGCGCATAAACAT GAAAGAGATTTTAGACAGGACTTCCATTCGAAGACATCTGGATTTTCTGCGGCCACTTTG AACACTTCCACTGGGAACTCAGATCTTTGTCTTCCTTATTCTTGTGAGTTGCCTTTGTGT TTTTTCTCCCCAAAATGTATGTGTTCATCGGGAACACATGTGGACAGAGCATCAGACTCC TGTCAGGAGGGTAGAAACTGTGATGGAACACTAGAGCTCTGTAACCGCAATGACGCTCTG CAGAAAATGCAGGTGAAAACTTGTAAAAATTCATTGGGTTGCCCTGGGGCGCAGAAGGCT GTTACTTCTTCAGAGGCCGTAGACAGATTTATGCCAAGGACAACACAACTGCAGGAGCGG AAAAGGAGACGAGAAGATGATCGTAAACTTGGAGCTTTCCTTGAAGCCAGCACAAGTAGT AACGAGGTTATGATTGGGCCTCTGTTACCAGACATACCTAAAGTGGACATGCATGATGAC TCATTGAATACAACAGCGAATTTAATTCGGAATAAACTTAAAGAGGTAATTTCATCTGTG CCAAAGCCTCCAGAGAACAAGCTGGAAGATGTGCATAGAAGTCATCCTTTAAAACAAAGG AGAAGAATATAAATTGCCTGCAGCAAATTAATATTTTTAGAGGACTATTTTTTATTTTTA GGCTGTCATTTTAATTTTTGGAGATTTTACTACTGGTATTTTTTTTTAAATGCACCCCCC TTTAAGCTACTTGTCTAAAATAGTTTCATCTAAGCTATAGTTTCATTTAAGCTACTTAAC TAAAATAGTTTCATCTTTTAAAATTAGTTTATCATGGGCAAAATACATAATAGCCAGTTA TATCCCTTACAAAATAATAATAATATTAATAATAACAATAATAGAACTTTTCCAGAAGCT CCAACCAGTGACTGTGCTTACATCTTATTGGCTAGAATTGGGCCCATGGCTGTCCCTGAG AAGTTTCCAACTTCTGTGGTTGAGAAAGCAAGAAAAAAGAGGGTTGTGAATGGCTAATTA GCCAATATTTATACCTATATAGCTAATTGCCAATATCTGCACCAAGATCCAAGGTGGCTG GCTGACTTAACAAACCAATAAATAAAATTAGTTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGGCAGCTAGGAGGCTTATTCGATCACCACGTCCAAAGGGCTGTATGCGACTCGCGG GCCAAGTATCGAGAGGGGCGCCGCCCTCGCGCTGTCAGGGTTTACACGATCAATTTGGAA TCTCGGTACTTATTAATACAAGGAGTTCCTGCAGTCGGAGCCATGAAGGAATTAGTTGAG CGATTTGCTTTGTATGGTGCAATTGAACAGTATAATGCTCTAGATGAATACCCAGCAGAA GACTTTACAGAAGTTTATCTTATTAAATTTCTCAATTTACAAAGTGCAAGGATAGCCAAG AGAAAAATGGATGAACAGAGTTTCTTTGGTGGATTGCTTCATGTGTGCTATGCTCCAGAA TTTGAGACAGTTGAAGAAACCAGAAAAAAATTACAGGAGAGGAATGCCTATATAGCAAGA ACTACTAAGAATAAAGATCATTACATGACAAAGAAGAAACTGGATACAGCGCATAAACAT GAAAGAGATTTTAGACAGGACTTCCATTCGAAGACATCTGGATTTTCTGCGGCCACTTTG AACACTTCCACTGGGAACTCAGATCTTTGTCTTCCTTATTCTTGTGAGTTGCCTTTGTGT TTTTTCTCCCCAAAATGTATGTGTTCATCGGGAACACATGTGGACAGAGCATCAGACTCC TGTCAGGAGGGTAGAAACTGTGATGGAACACTAGAGCTCTGTAACCGCAATGACGCTCTG CAGAAAATGCAGGTGAAAACTTGTAAAAATTCATTGGGTTGCCCTGGGGCGCAGAAGGCT GTTACTTCTTCAGAGGCCGTAGACAGATTTATGCCAAGGACAACACAACTGCAGGAGCGG AAAAGGAGACGAGAAGATGATCGTAAACTTGGAGCTTTCCTTGAAGCCAGCACAAGTAGT AACGAGGTTATGATTGGGCCTCTGTTACCAGACATACCTAAAGTGGACATGCATGATGAC TCATTGAATACAACAGCGAATTTAATTCGGAATAAACTTAAAGAGGTAATTTCATCTGTG CCAAAGCCTCCAGAGAACAAGCTGGAAGATGTGCATAGAAGTCATCCTTTAAAACAAAGG AGAAGAATATAAATTGCCTGCAGCAAATTAATATTTTTAGAGGACTATTTTTTATTTTTA GGCTGTCATTTTAATTTTTGGAGATTTTACTACTGGTATTTTTTTTTAAATGCACCCCCC TTTAAGCTACTTGTCTAAAATAGTTTCATCTAAGCTATAGTTTCATTTAAGCTACTTAAC TAAAATAGTTTCATCTTTTAAAATTAGTTTATCATGGGCAAAATACATAATAGCCAGTTA TATCCCTTACAAAATAATAATAATATTAATAATAACAATAATAGAACTTTTCCAGAAGCT CCAACCAGTGACTGTGCTTACATCTTATTGGCTAGAATTGGGCCCATGGCTGTCCCTGAG AAGTTTCCAACTTCTGTGGTTGAGAAAGCAAGAAAAAAGAGGGTTGTGAATGGCTAATTA GCCAATATTTATACCTATATAGCTAATTGCCAATATCTGCACCAAGATCCAAGGTGGCTG GCTGACTTAACAAACCAATAAATAAAATTAGTTTAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 99-291, gnl|bosTau2|chr4 (4196723-4196915) | |
| 99-291, gnl|canFam2|chr14 (21064741-21064952) | |
| 99-291, gnl|canFam2|chr14 (21064758-21064948) | |
| 99-291, gnl|danRer3|chr19 (56348283-56348490) | |
| 99-291, gnl|danRer3|chr19 (56348297-56348487) | |
| 99-291, gnl|echTel1|scaffold_308502 (329544-329335) | |
| 99-291, gnl|echTel1|scaffold_308502 (329524-329339) | |
| 99-291, gnl|fr1|chrUn (86999878-87000079) | |
| 99-291, gnl|fr1|chrUn (86999885-87000075) | |
| 99-291, gnl|galGal2|chr2 (21984894-21985096) | |
| 99-291, gnl|galGal2|chr2 (21984903-21985092) | |
| 99-291, gnl|hg17|chr4 (127842379-127842569) | |
| 99-291, gnl|hg17|chr7 (91803423-91803634) | |
| 99-291, gnl|Hg17|chr7 (91803440-91803632) | |
| 99-291, gnl|loxAfr1|scaffold_2379 (81114-80903) | |
| 99-291, gnl|loxAfr1|scaffold_2379 (81092-80907) | |
| 99-291, gnl|mm7|chr5 (3601471-3601260) | |
| 99-291, gnl|mm7|chr5 (3601449-3601264) | |
| 99-291, gnl|Mm7|chr5 (3601452-3601260) | |
| 99-291, gnl|monDom2|scaffold_7 (60512458-60512669) | |
| 99-291, gnl|monDom2|scaffold_7 (60512475-60512665) | |
| 99-291, gnl|oryCun1|scaffold_165015 (4462-4676) | |
| 99-291, gnl|oryCun1|scaffold_191234 (47151-46966) | |
| 99-291, gnl|panTro1|chr3 (144697047-144697237) | |
| 99-291, gnl|panTro1|chr6 (93359984-93360195) | |
| 99-291, gnl|rheMac2|chr3 (124736373-124736162) | |
| 99-291, gnl|rheMac2|chr5 (118892236-118892426) | |
| 99-291, gnl|rn3|chr4 (27293364-27293575) | |
| 99-291, gnl|rn3|chr4 (27293386-27293571) | |
| 99-291, gnl|tetNig1|chr21 (1077444-1077651) | |
| 99-291, gnl|tetNig1|chr21 (1077457-1077647) | |
| 99-291, gnl|xenTro1|scaffold_182 (70095-70304) | |
| 99-291, gnl|xenTro1|scaffold_182 (70110-70300) | |
| 471-1009, gnl|bosTau2|chr4 (4199895-4200433) | |
| 471-1009, gnl|Hg17|chr7 (91808386-91808939) | |
| 471-1009, gnl|Mm7|chr5 (3596790-3596225) | |
| 1238-1510, gnl|bosTau2|chr4 (4202227-4202498) | |
| 1238-1510, gnl|canFam2|chr6 (27982349-27982064) | |
| 1238-1510, gnl|hg17|chr16 (20313921-20314208) | |
| 1238-1510, gnl|rheMac2|chr20 (19390718-19391005) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 99-291, gnl|bosTau2|chr4 (4196723-4196915) | |
| 99-291, gnl|canFam2|chr14 (21064741-21064952) | |
| 99-291, gnl|canFam2|chr14 (21064758-21064948) | |
| 99-291, gnl|danRer3|chr19 (56348283-56348490) | |
| 99-291, gnl|danRer3|chr19 (56348297-56348487) | |
| 99-291, gnl|echTel1|scaffold_308502 (329544-329335) | |
| 99-291, gnl|echTel1|scaffold_308502 (329524-329339) | |
| 99-291, gnl|fr1|chrUn (86999878-87000079) | |
| 99-291, gnl|fr1|chrUn (86999885-87000075) | |
| 99-291, gnl|galGal2|chr2 (21984894-21985096) | |
| 99-291, gnl|galGal2|chr2 (21984903-21985092) | |
| 99-291, gnl|hg17|chr4 (127842379-127842569) | |
| 99-291, gnl|hg17|chr7 (91803423-91803634) | |
| 99-291, gnl|Hg17|chr7 (91803440-91803632) | |
| 99-291, gnl|loxAfr1|scaffold_2379 (81114-80903) | |
| 99-291, gnl|loxAfr1|scaffold_2379 (81092-80907) | |
| 99-291, gnl|mm7|chr5 (3601471-3601260) | |
| 99-291, gnl|mm7|chr5 (3601449-3601264) | |
| 99-291, gnl|Mm7|chr5 (3601452-3601260) | |
| 99-291, gnl|monDom2|scaffold_7 (60512458-60512669) | |
| 99-291, gnl|monDom2|scaffold_7 (60512475-60512665) | |
| 99-291, gnl|oryCun1|scaffold_165015 (4462-4676) | |
| 99-291, gnl|oryCun1|scaffold_191234 (47151-46966) | |
| 99-291, gnl|panTro1|chr3 (144697047-144697237) | |
| 99-291, gnl|panTro1|chr6 (93359984-93360195) | |
| 99-291, gnl|rheMac2|chr3 (124736373-124736162) | |
| 99-291, gnl|rheMac2|chr5 (118892236-118892426) | |
| 99-291, gnl|rn3|chr4 (27293364-27293575) | |
| 99-291, gnl|rn3|chr4 (27293386-27293571) | |
| 99-291, gnl|tetNig1|chr21 (1077444-1077651) | |
| 99-291, gnl|tetNig1|chr21 (1077457-1077647) | |
| 99-291, gnl|xenTro1|scaffold_182 (70095-70304) | |
| 99-291, gnl|xenTro1|scaffold_182 (70110-70300) | |
| 471-1009, gnl|bosTau2|chr4 (4199895-4200433) | |
| 471-1009, gnl|Hg17|chr7 (91808386-91808939) | |
| 471-1009, gnl|Mm7|chr5 (3596790-3596225) | |
| 1238-1510, gnl|bosTau2|chr4 (4202227-4202498) | |
| 1238-1510, gnl|canFam2|chr6 (27982349-27982064) | |
| 1238-1510, gnl|hg17|chr16 (20313921-20314208) | |
| 1238-1510, gnl|rheMac2|chr20 (19390718-19391005) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| jej (0.296765) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fat (0.147427) | |
| ski (0.146735) | |
| ste (0.135208) | |
| thg (0.126791) | |
| cbl (0.114797) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.296765) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fat (0.147427) | |
| ski (0.146735) | |
| ste (0.135208) | |
| thg (0.126791) | |
| cbl (0.114797) | |
| cty (0.10408) |