Non-Coding RNA Search

Ss1.1-Mixn-0014g23.5

Sequence:


               
               GCCCTTAAAAAAAAAAAACCAAAAAACAATTGACGCTCTTGAGTTTAGTTTTCTCTTGTG
GGTAAAGCTCATTTAAAATGATGTAGTGAATCTAGGCATTTTTCTGCTTGTTAGCAGTAC
CTTGCTTGCCTCATTTGTTTCCTGATTAACTTTCTCAGGATTCTCAATAAAGAGGCAAAA
GAGAAAAGACTCAAGACACAGATCTTTTCTGTTGGTGCAAATGGGCGACTTAATGCATTG
ATTCAGGTATTCTTGACTTTCTTGCTATGTTACTGTCAAATATTGACCAGAACTTTAGGT
CTTGAAAGACTTCTCTAAGTCTACAATAACCTTTGTTTAGGGATAGAGTGAAAGGTCACT
GGCATCTAAATTTCTATACCCAAGGTAACCTGTGAGATGAAGTTTGATACCTGACTGGTC
CCTCAATATGGAGTCATGTGTTGCTAACAGCATTAAGGATGTGTTAGGAATTCTACATCA
CTCAGAGGGCAACTATTCACATCCCAGACTCTGGGCTGTTTCCTTCTTAAAATCATGTAG
GCAACTAGCTGTTTGAAGTTAAGTGTTAAGTAGTTCCGAAAGCGTGGATTTCATGTATCT
GAGCTCCTCTCTCGTTGCTGTCAGTTTTCCTTCAGCTGTGATCCACGAACTACTAGGATG
TCTTCTTCTTTCATTTCAGGGGCTGTTCCAAGACTCAAATCAGTAACTTGATTATTACAA
GGTGCTGAATATGTTGGTAACCACATTGCAATACACCTCGAAGAGAGGGTTCAGATTTTT
ATTTTTAAAATAACTTCATTTTCTTCTCTTTTGAATTTTATATCCATTTATCCACCCAGA
CACACCTAGCCTACAGAAGGGGATATGTATTATGAAATGGGCATTTTTCCGAAGAGAGTA
TTTTGCTTGAAATGCAAAGGACTGAAAGAGATTTTTAGGTTGCTGATTTTGTTACTTCAT
ACTGAAACTTTTACGAAGTTTTCATCAATAAAGTTTTGTTTTCTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCTTAAAAAAAAAAAACCAAAAAACAATTGACGCTCTTGAGTTTAGTTTTCTCTTGTG
GGTAAAGCTCATTTAAAATGATGTAGTGAATCTAGGCATTTTTCTGCTTGTTAGCAGTAC
CTTGCTTGCCTCATTTGTTTCCTGATTAACTTTCTCAGGATTCTCAATAAAGAGGCAAAA
GAGAAAAGACTCAAGACACAGATCTTTTCTGTTGGTGCAAATGGGCGACTTAATGCATTG
ATTCAGGTATTCTTGACTTTCTTGCTATGTTACTGTCAAATATTGACCAGAACTTTAGGT
CTTGAAAGACTTCTCTAAGTCTACAATAACCTTTGTTTAGGGATAGAGTGAAAGGTCACT
GGCATCTAAATTTCTATACCCAAGGTAACCTGTGAGATGAAGTTTGATACCTGACTGGTC
CCTCAATATGGAGTCATGTGTTGCTAACAGCATTAAGGATGTGTTAGGAATTCTACATCA
CTCAGAGGGCAACTATTCACATCCCAGACTCTGGGCTGTTTCCTTCTTAAAATCATGTAG
GCAACTAGCTGTTTGAAGTTAAGTGTTAAGTAGTTCCGAAAGCGTGGATTTCATGTATCT
GAGCTCCTCTCTCGTTGCTGTCAGTTTTCCTTCAGCTGTGATCCACGAACTACTAGGATG
TCTTCTTCTTTCATTTCAGGGGCTGTTCCAAGACTCAAATCAGTAACTTGATTATTACAA
GGTGCTGAATATGTTGGTAACCACATTGCAATACACCTCGAAGAGAGGGTTCAGATTTTT
ATTTTTAAAATAACTTCATTTTCTTCTCTTTTGAATTTTATATCCATTTATCCACCCAGA
CACACCTAGCCTACAGAAGGGGATATGTATTATGAAATGGGCATTTTTCCGAAGAGAGTA
TTTTGCTTGAAATGCAAAGGACTGAAAGAGATTTTTAGGTTGCTGATTTTGTTACTTCAT
ACTGAAACTTTTACGAAGTTTTCATCAATAAAGTTTTGTTTTCTACTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               100-217, - strand, RNAz p=0.929859

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-217, - strand, RNAz p=0.929859

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               22-352, gnl|bosTau2|chr12 (42353745-42354078)
               

               
               22-352, gnl|Hg17|chr13 (102290642-102291215)
               

               
               22-352, gnl|Mm7|chr1 (44383940-44384260)
               


               
               360-1008, gnl|bosTau2|chr10 (8812812-8812156)
               

               
               360-1008, gnl|Hg17|chr13 (102291224-102291880)
               

               
               360-1008, gnl|Mm7|chr1 (44384269-44384900)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-352, gnl|bosTau2|chr12 (42353745-42354078)
               

               
               22-352, gnl|Hg17|chr13 (102290642-102291215)
               

               
               22-352, gnl|Mm7|chr1 (44383940-44384260)
               


               
               360-1008, gnl|bosTau2|chr10 (8812812-8812156)
               

               
               360-1008, gnl|Hg17|chr13 (102291224-102291880)
               

               
               360-1008, gnl|Mm7|chr1 (44384269-44384900)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               mga (0.480615)
               

               
               isp (0.300752)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.480615)
               

               
               isp (0.300752)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	22-352, gnl\|bosTau2\|chr12 (42353745-42354078)
	22-352, gnl\|Hg17\|chr13 (102290642-102291215)
	22-352, gnl\|Mm7\|chr1 (44383940-44384260)

	360-1008, gnl\|bosTau2\|chr10 (8812812-8812156)
	360-1008, gnl\|Hg17\|chr13 (102291224-102291880)
	360-1008, gnl\|Mm7\|chr1 (44384269-44384900)

	mga (0.480615)
	isp (0.300752)
	fce (0.271592)
	thg (0.253582)
	fty (0.17584)
	rec (0.17307)
	spl (0.143184)
	ssp (0.13552)
	lyg (0.133103)
	kid (0.129735)
	cbl (0.114797)
	jca (0.11396)