Non-Coding RNA Search

Ss1.1-Mixn-0014j08.5

Sequence:


               
               GGAGGCCACACAGTCCAAGATGGACTCTTTGCGAGCATCCCGGATAGGGCGTGCGGGAGG
GCGCGGGATGCTGGCATTGCTGCTGGCCAGTCTCCTCCTGCAAGGGACCTTGGCCAAGAG
CATCGGGACTTTCTTAGACCCCTGCAAGGACCCCACGCGTATTGCCTCCCCCAATGACCC
CTGTCTCCTGGGGAAGGGGGGCTCCAGCAGCTTCAGTAGCCACAGTAGCTCCAGCAGTTC
CAGCAGCTCCATTTCTAGTCCCAGTGGCTCCAGTGGTGGCTCCCATGGTGGCTCCAGTGG
CTCCGGTGGTGGTTCCGGTGGTTCCAGTGGCAGCTCCAGTGGCTCCAGTGGTGGCTCTGG
TGGATCCATTGCTGTCCATAGCGGTTCTTCAGGATCCTCGTTTAAGCCGGGAACAGGCTA
TTCGCAGATCAGCTACTCCTCCGGATCTGGCTCTAGTCTACAAGGTGCCTCCAGCTCCTC
CCAGTCAGGAAGCATTAGCTCCCAGTCTGCAGGAGGCTTGAGCTCTTCTGTTTCCCACAC
CTCCTGGATGTCCAGCAGCAGTGGCCAAAAGGTCAACTCCAATCTGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGCCACACAGTCCAAGATGGACTCTTTGCGAGCATCCCGGATAGGGCGTGCGGGAGG
GCGCGGGATGCTGGCATTGCTGCTGGCCAGTCTCCTCCTGCAAGGGACCTTGGCCAAGAG
CATCGGGACTTTCTTAGACCCCTGCAAGGACCCCACGCGTATTGCCTCCCCCAATGACCC
CTGTCTCCTGGGGAAGGGGGGCTCCAGCAGCTTCAGTAGCCACAGTAGCTCCAGCAGTTC
CAGCAGCTCCATTTCTAGTCCCAGTGGCTCCAGTGGTGGCTCCCATGGTGGCTCCAGTGG
CTCCGGTGGTGGTTCCGGTGGTTCCAGTGGCAGCTCCAGTGGCTCCAGTGGTGGCTCTGG
TGGATCCATTGCTGTCCATAGCGGTTCTTCAGGATCCTCGTTTAAGCCGGGAACAGGCTA
TTCGCAGATCAGCTACTCCTCCGGATCTGGCTCTAGTCTACAAGGTGCCTCCAGCTCCTC
CCAGTCAGGAAGCATTAGCTCCCAGTCTGCAGGAGGCTTGAGCTCTTCTGTTTCCCACAC
CTCCTGGATGTCCAGCAGCAGTGGCCAAAAGGTCAACTCCAATCTGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q767M8_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q767M8_PIG

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               103-350, gnl|bosTau2|chr23 (20519180-20519439)
               

               
               103-350, gnl|canFam2|chr12 (3825027-3825313)
               

               
               103-350, gnl|fr1|chrUn (181275597-181275937)
               

               
               103-350, gnl|hg17|chr6 (31192935-31193272)
               

               
               103-350, gnl|loxAfr1|scaffold_150147 (4582-4964)
               

               
               103-350, gnl|mm7|chr17 (33656966-33656623)
               

               
               103-350, gnl|monDom2|scaffold_42 (18228694-18228306)
               

               
               103-350, gnl|oryCun1|scaffold_129621 (330-50)
               

               
               103-350, gnl|panTro1|chr5 (31658336-31658673)
               

               
               103-350, gnl|rheMac2|chr4 (30691500-30691843)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-350, gnl|bosTau2|chr23 (20519180-20519439)
               

               
               103-350, gnl|canFam2|chr12 (3825027-3825313)
               

               
               103-350, gnl|fr1|chrUn (181275597-181275937)
               

               
               103-350, gnl|hg17|chr6 (31192935-31193272)
               

               
               103-350, gnl|loxAfr1|scaffold_150147 (4582-4964)
               

               
               103-350, gnl|mm7|chr17 (33656966-33656623)
               

               
               103-350, gnl|monDom2|scaffold_42 (18228694-18228306)
               

               
               103-350, gnl|oryCun1|scaffold_129621 (330-50)
               

               
               103-350, gnl|panTro1|chr5 (31658336-31658673)
               

               
               103-350, gnl|rheMac2|chr4 (30691500-30691843)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	103-350, gnl\|bosTau2\|chr23 (20519180-20519439)
	103-350, gnl\|canFam2\|chr12 (3825027-3825313)
	103-350, gnl\|fr1\|chrUn (181275597-181275937)
	103-350, gnl\|hg17\|chr6 (31192935-31193272)
	103-350, gnl\|loxAfr1\|scaffold_150147 (4582-4964)
	103-350, gnl\|mm7\|chr17 (33656966-33656623)
	103-350, gnl\|monDom2\|scaffold_42 (18228694-18228306)
	103-350, gnl\|oryCun1\|scaffold_129621 (330-50)
	103-350, gnl\|panTro1\|chr5 (31658336-31658673)
	103-350, gnl\|rheMac2\|chr4 (30691500-30691843)