Ss1.1-Mixn-0014m03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACATGTACATGTTTATTGGTGGCACCAATTTCGCCTATTGGAATGGGGCCAACACACCC TACCAACCACAGCCCACCAGCTATGATTATGATGCCCCACTGAGTGAGGCTGGGGATCTC ACTGAGAAGTATTTTGCTCTGCGAGATGTGATTCAGAAGTTCAAAAAAGTACCAGAAGGT CTTATTCCTCCATCCACACCCAAGTTTGCATATGGAAAAGTTGCTCTGAAAAAGTTAAAA ACAGTGGTGGAAGCTCTGGACATTCTGTGTCCCTCTGGACCCATAAAAAGCTTTTATCCC TTGACATTTATCCAGGTGAAACAGTATTTTGGGTTTGTACTGTACCGGACAACGCTTCCT AAAGACTGCAAGGACCCAACACATCTCTCTTCGCCCTTCAATGGTGTCCACGATCGGGCT TATGTCTCTGTGGACGGGGTCCCCCAGGGAGTCCTTGAGCGAAATATTGTGATTACCCTG AACATAACAGGGAAAGCTGGAGCCACCCTGGACCTCCTGGTGGAGAACATGGGGCGTGTG AACTATGGCAATTCCATCAATGATTTTAAGGGTCTTATTTCTAACCTGACCCTTGGTTCC AGTATCCTCACTGACTGGCAGATCTTCCCGATGGACACTGAGGATGCAGTTCGCGGCCAC CTTGGGGCCTGGCATGGCTATGGTGGCAAGGGCCACCATGAAGCCCATACCCACAGCCCA TCTGAGTACACACTGCCAGCCTTTTATGTGGCTAACTTCTCTATTCCCAGTGAGATCCCA GACTTGCCCCAGGACACCTTTATCCAGTTTCCTGGATGGACCAAGGGTCAGGTGTGGATA AATGGTTTTAACCTTGGCCGCTATTGGCCAGCTCGAGGTCCCCAGAAGACCTTATTTGTG CCGCAGCACATCCTGGTGACCTCGGCTCCAAACACCATCATCGTGCTGGAGCTGGAGCAT GCACCCTGCGGGGACAAGGAGCCGTGCACTGTGGAGTTCGTGGACAAGCCGCTTATTGGC GCAACCGAGACCTGGAGCCATGTCCCTCAAGACCAAAACCGAGACTCAAAGCCAGGCCGC GTGTAATGACGATGACTGTGACCCTTCGGAACTGTAGCCTTGCACATACCTCGCATAACC CTCAGGATGCCAGCATTCACTGAGGAGTTCGATTGGAAAACAGATGAGTTGTTTTCTCAC CCAAGGATTTCCTGCAGCCTTGTGGCACCTGAGGCACCCCTGTCCACTGCACAGATGTGG GGTAGGATGGTGGTAGCCCAGCAATGCACAGAAGCCTCCAAAGAATTGAAATGGAGGCTT TAAGGGTGTTTCTAATTTTCACTTTGGAAGAATCATGTCTTTTTATTAAATAAAATTTGT ATTCAAATGAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACATGTACATGTTTATTGGTGGCACCAATTTCGCCTATTGGAATGGGGCCAACACACCC TACCAACCACAGCCCACCAGCTATGATTATGATGCCCCACTGAGTGAGGCTGGGGATCTC ACTGAGAAGTATTTTGCTCTGCGAGATGTGATTCAGAAGTTCAAAAAAGTACCAGAAGGT CTTATTCCTCCATCCACACCCAAGTTTGCATATGGAAAAGTTGCTCTGAAAAAGTTAAAA ACAGTGGTGGAAGCTCTGGACATTCTGTGTCCCTCTGGACCCATAAAAAGCTTTTATCCC TTGACATTTATCCAGGTGAAACAGTATTTTGGGTTTGTACTGTACCGGACAACGCTTCCT AAAGACTGCAAGGACCCAACACATCTCTCTTCGCCCTTCAATGGTGTCCACGATCGGGCT TATGTCTCTGTGGACGGGGTCCCCCAGGGAGTCCTTGAGCGAAATATTGTGATTACCCTG AACATAACAGGGAAAGCTGGAGCCACCCTGGACCTCCTGGTGGAGAACATGGGGCGTGTG AACTATGGCAATTCCATCAATGATTTTAAGGGTCTTATTTCTAACCTGACCCTTGGTTCC AGTATCCTCACTGACTGGCAGATCTTCCCGATGGACACTGAGGATGCAGTTCGCGGCCAC CTTGGGGCCTGGCATGGCTATGGTGGCAAGGGCCACCATGAAGCCCATACCCACAGCCCA TCTGAGTACACACTGCCAGCCTTTTATGTGGCTAACTTCTCTATTCCCAGTGAGATCCCA GACTTGCCCCAGGACACCTTTATCCAGTTTCCTGGATGGACCAAGGGTCAGGTGTGGATA AATGGTTTTAACCTTGGCCGCTATTGGCCAGCTCGAGGTCCCCAGAAGACCTTATTTGTG CCGCAGCACATCCTGGTGACCTCGGCTCCAAACACCATCATCGTGCTGGAGCTGGAGCAT GCACCCTGCGGGGACAAGGAGCCGTGCACTGTGGAGTTCGTGGACAAGCCGCTTATTGGC GCAACCGAGACCTGGAGCCATGTCCCTCAAGACCAAAACCGAGACTCAAAGCCAGGCCGC GTGTAATGACGATGACTGTGACCCTTCGGAACTGTAGCCTTGCACATACCTCGCATAACC CTCAGGATGCCAGCATTCACTGAGGAGTTCGATTGGAAAACAGATGAGTTGTTTTCTCAC CCAAGGATTTCCTGCAGCCTTGTGGCACCTGAGGCACCCCTGTCCACTGCACAGATGTGG GGTAGGATGGTGGTAGCCCAGCAATGCACAGAAGCCTCCAAAGAATTGAAATGGAGGCTT TAAGGGTGTTTCTAATTTTCACTTTGGAAGAATCATGTCTTTTTATTAAATAAAATTTGT ATTCAAATGAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 824-942, + strand, RNAz p=0.90569 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 824-942, + strand, RNAz p=0.90569 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_000404, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 46-159, gnl|bosTau2|chr22 (11204840-11204727) | |
| 46-159, gnl|canFam2|chr23 (6785200-6785067) | |
| 46-159, gnl|danRer3|chr1 (52015978-52016114) | |
| 46-159, gnl|dasNov1|scaffold_19535 (1260-1393) | |
| 46-159, gnl|echTel1|scaffold_307518 (10972-10839) | |
| 46-159, gnl|fr1|chrUn (86471446-86471327) | |
| 46-159, gnl|galGal2|chr2 (43536898-43537030) | |
| 46-159, gnl|hg17|chr3 (33062611-33062744) | |
| 46-159, gnl|Hg17|chr3 (33062729-33062616) | |
| 46-159, gnl|loxAfr1|scaffold_7751 (94858-94991) | |
| 46-159, gnl|mm7|chr9 (114094224-114094092) | |
| 46-159, gnl|Mm7|chr9 (114094104-114094217) | |
| 46-159, gnl|oryCun1|scaffold_178738 (4-114) | |
| 46-159, gnl|panTro1|chr2 (34079351-34079484) | |
| 46-159, gnl|rheMac2|chr2 (175531262-175531395) | |
| 46-159, gnl|rn3|chr8 (118851188-118851056) | |
| 46-159, gnl|tetNig1|chr18 (5612057-5612173) | |
| 46-159, gnl|xenTro1|scaffold_26 (1349918-1349792) | |
| 438-571, gnl|bosTau2|chr22 (11172686-11172553) | |
| 438-571, gnl|canFam2|chr23 (6805955-6805791) | |
| 438-571, gnl|danRer3|chr1 (52011731-52011862) | |
| 438-571, gnl|dasNov1|scaffold_143103 (2456-2292) | |
| 438-571, gnl|echTel1|scaffold_235180 (3204-3365) | |
| 438-571, gnl|fr1|chrUn (86472296-86472151) | |
| 438-571, gnl|galGal2|chr2 (43525679-43525857) | |
| 438-571, gnl|hg17|chr3 (33033195-33033360) | |
| 438-571, gnl|Hg17|chr3 (33033337-33033204) | |
| 438-571, gnl|loxAfr1|scaffold_7751 (61549-61713) | |
| 438-571, gnl|mm7|chr9 (114110830-114110678) | |
| 438-571, gnl|Mm7|chr9 (114110689-114110822) | |
| 438-571, gnl|monDom2|scaffold_7 (61555873-61555715) | |
| 438-571, gnl|oryCun1|scaffold_188124 (11250-11086) | |
| 438-571, gnl|panTro1|chr2 (34046804-34046969) | |
| 438-571, gnl|rn3|chr8 (118867986-118867834) | |
| 438-571, gnl|tetNig1|chr18 (5611207-5611358) | |
| 824-1390, gnl|bosTau2|chr22 (11149711-11149169) | |
| 824-1390, gnl|Hg17|chr3 (33013842-33013221) | |
| 824-1390, gnl|Mm7|chr9 (114124932-114125478) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-159, gnl|bosTau2|chr22 (11204840-11204727) | |
| 46-159, gnl|canFam2|chr23 (6785200-6785067) | |
| 46-159, gnl|danRer3|chr1 (52015978-52016114) | |
| 46-159, gnl|dasNov1|scaffold_19535 (1260-1393) | |
| 46-159, gnl|echTel1|scaffold_307518 (10972-10839) | |
| 46-159, gnl|fr1|chrUn (86471446-86471327) | |
| 46-159, gnl|galGal2|chr2 (43536898-43537030) | |
| 46-159, gnl|hg17|chr3 (33062611-33062744) | |
| 46-159, gnl|Hg17|chr3 (33062729-33062616) | |
| 46-159, gnl|loxAfr1|scaffold_7751 (94858-94991) | |
| 46-159, gnl|mm7|chr9 (114094224-114094092) | |
| 46-159, gnl|Mm7|chr9 (114094104-114094217) | |
| 46-159, gnl|oryCun1|scaffold_178738 (4-114) | |
| 46-159, gnl|panTro1|chr2 (34079351-34079484) | |
| 46-159, gnl|rheMac2|chr2 (175531262-175531395) | |
| 46-159, gnl|rn3|chr8 (118851188-118851056) | |
| 46-159, gnl|tetNig1|chr18 (5612057-5612173) | |
| 46-159, gnl|xenTro1|scaffold_26 (1349918-1349792) | |
| 438-571, gnl|bosTau2|chr22 (11172686-11172553) | |
| 438-571, gnl|canFam2|chr23 (6805955-6805791) | |
| 438-571, gnl|danRer3|chr1 (52011731-52011862) | |
| 438-571, gnl|dasNov1|scaffold_143103 (2456-2292) | |
| 438-571, gnl|echTel1|scaffold_235180 (3204-3365) | |
| 438-571, gnl|fr1|chrUn (86472296-86472151) | |
| 438-571, gnl|galGal2|chr2 (43525679-43525857) | |
| 438-571, gnl|hg17|chr3 (33033195-33033360) | |
| 438-571, gnl|Hg17|chr3 (33033337-33033204) | |
| 438-571, gnl|loxAfr1|scaffold_7751 (61549-61713) | |
| 438-571, gnl|mm7|chr9 (114110830-114110678) | |
| 438-571, gnl|Mm7|chr9 (114110689-114110822) | |
| 438-571, gnl|monDom2|scaffold_7 (61555873-61555715) | |
| 438-571, gnl|oryCun1|scaffold_188124 (11250-11086) | |
| 438-571, gnl|panTro1|chr2 (34046804-34046969) | |
| 438-571, gnl|rn3|chr8 (118867986-118867834) | |
| 438-571, gnl|tetNig1|chr18 (5611207-5611358) | |
| 824-1390, gnl|bosTau2|chr22 (11149711-11149169) | |
| 824-1390, gnl|Hg17|chr3 (33013842-33013221) | |
| 824-1390, gnl|Mm7|chr9 (114124932-114125478) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cov (0.528611) | |
| cut (0.509771) | |
| pla (0.267344) | |
| ute (0.265569) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| cut (0.509771) | |
| pla (0.267344) | |
| ute (0.265569) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |