Ss1.1-Mixn-0014m07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGGAAACGTCCAAGTTCTATTCTCAGCTCGCAGTCAGGGCTGTCCTTGGACTCGGCG TCATCTGGGGGCTCTGGACTTTGCAAACCGAAGTGAGACGGCAGTTCGGGGCCCCGGTGG CCACTCTGTTCTGCTGCCTGACGGCCTCGCAGTTCCACCTCATGTTCTACTGCTCGCGGC CGCTGCCCAACGTGCTGGCCCTGCCCTTCGTGCTGCTGGCCCTCACAGCCTGGCTGCAGC AGAAGTGGCCCCGCTTCATCCGGCTCTCCGCCTTCGCCATCCTGGTCTTCAGAGCCGAGC TGAGCCTGCTCCTGGGCCTCGCGCTGCTGCTGCCGCTCTGCTCGCGGAGGCTCTCGGTGG CCAGGGCCCTGCGCTGCGCCGTGCCCGCCGGGGTCCTCTGCCTGGGGCTGACGGTGGCCG TGGACTCCTACTTCTGGCGCGCTCCCGTGTGGCCGGAGGGAAAGGTGCTCTGGTACAACA CCGTCCTGAACAAAAGTTCCAACTGGGGGACCTCGCCCCTGCTGTGGTACTTCTACTCGG CCCTGCCCCGCGGCCTGGGCTGCAGCCTGCTCTTCGTGCCCCTGGGCGCCGTGGACAGAA GGGCCGTGGCGCTGCTCCTGCCGGCGCTGGGCTTCGTGGCGCTGTACTCGCTGCTCCCGC ACAAGGAGCTGCGCTTCATCATCTACGCCTTCCCCCTGCTCAACGTCGTGGCCGCCAGGG GCTGCGCCCGCGTGCTGAACAACCGCAGGAAGTCCTGGCTGTATAAAGTGGGGTCCCTCT TTGTGATCGGACACCTCGTGGCGAACGCCATGTGCTCGGCCACAGGCCTGTACGTATCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGGAAACGTCCAAGTTCTATTCTCAGCTCGCAGTCAGGGCTGTCCTTGGACTCGGCG TCATCTGGGGGCTCTGGACTTTGCAAACCGAAGTGAGACGGCAGTTCGGGGCCCCGGTGG CCACTCTGTTCTGCTGCCTGACGGCCTCGCAGTTCCACCTCATGTTCTACTGCTCGCGGC CGCTGCCCAACGTGCTGGCCCTGCCCTTCGTGCTGCTGGCCCTCACAGCCTGGCTGCAGC AGAAGTGGCCCCGCTTCATCCGGCTCTCCGCCTTCGCCATCCTGGTCTTCAGAGCCGAGC TGAGCCTGCTCCTGGGCCTCGCGCTGCTGCTGCCGCTCTGCTCGCGGAGGCTCTCGGTGG CCAGGGCCCTGCGCTGCGCCGTGCCCGCCGGGGTCCTCTGCCTGGGGCTGACGGTGGCCG TGGACTCCTACTTCTGGCGCGCTCCCGTGTGGCCGGAGGGAAAGGTGCTCTGGTACAACA CCGTCCTGAACAAAAGTTCCAACTGGGGGACCTCGCCCCTGCTGTGGTACTTCTACTCGG CCCTGCCCCGCGGCCTGGGCTGCAGCCTGCTCTTCGTGCCCCTGGGCGCCGTGGACAGAA GGGCCGTGGCGCTGCTCCTGCCGGCGCTGGGCTTCGTGGCGCTGTACTCGCTGCTCCCGC ACAAGGAGCTGCGCTTCATCATCTACGCCTTCCCCCTGCTCAACGTCGTGGCCGCCAGGG GCTGCGCCCGCGTGCTGAACAACCGCAGGAAGTCCTGGCTGTATAAAGTGGGGTCCCTCT TTGTGATCGGACACCTCGTGGCGAACGCCATGTGCTCGGCCACAGGCCTGTACGTATCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 220-339, + strand, RNAz p=0.978258 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 220-339, + strand, RNAz p=0.978258 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 198-426, gnl|bosTau2|chr5 (76293079-76293304) | |
| 198-426, gnl|canFam2|chr10 (20285288-20285034) | |
| 198-426, gnl|danRer3|chr20 (56581142-56580895) | |
| 198-426, gnl|echTel1|scaffold_316962 (38840-38598) | |
| 198-426, gnl|fr1|chrUn (52075266-52075488) | |
| 198-426, gnl|galGal2|chr1 (15937599-15937805) | |
| 198-426, gnl|hg17|chr22 (48624379-48624634) | |
| 198-426, gnl|Hg17|chr22 (48624611-48624382) | |
| 198-426, gnl|mm7|chr15 (88896765-88897024) | |
| 198-426, gnl|Mm7|chr15 (88897014-88896780) | |
| 198-426, gnl|oryCun1|scaffold_173883 (72307-72557) | |
| 198-426, gnl|panTro1|chr23 (49044976-49045231) | |
| 198-426, gnl|rn3|chr7 (127153375-127153595) | |
| 198-426, gnl|tetNig1|chr19 (5126587-5126371) | |
| 198-426, gnl|xenTro1|scaffold_24 (3141364-3141588) | |
| 509-734, gnl|bosTau2|chr5 (76294312-76294537) | |
| 509-734, gnl|canFam2|chr10 (20286265-20286004) | |
| 509-734, gnl|danRer3|chr20 (56582524-56582294) | |
| 509-734, gnl|echTel1|scaffold_316962 (39453-39199) | |
| 509-734, gnl|fr1|chrUn (52074792-52075070) | |
| 509-734, gnl|galGal2|chr1 (15935476-15935764) | |
| 509-734, gnl|hg17|chr22 (48622201-48622480) | |
| 509-734, gnl|Hg17|chr22 (48622454-48622229) | |
| 509-734, gnl|mm7|chr15 (88893604-88893882) | |
| 509-734, gnl|Mm7|chr15 (88893856-88893631) | |
| 509-734, gnl|oryCun1|scaffold_173883 (69256-69533) | |
| 509-734, gnl|panTro1|chr23 (49042766-49043045) | |
| 509-734, gnl|rheMac2|chr10 (93871602-93871881) | |
| 509-734, gnl|rn3|chr7 (127150500-127150778) | |
| 509-734, gnl|tetNig1|chr19 (5127061-5126805) | |
| 509-734, gnl|xenTro1|scaffold_24 (3139292-3139546) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 198-426, gnl|bosTau2|chr5 (76293079-76293304) | |
| 198-426, gnl|canFam2|chr10 (20285288-20285034) | |
| 198-426, gnl|danRer3|chr20 (56581142-56580895) | |
| 198-426, gnl|echTel1|scaffold_316962 (38840-38598) | |
| 198-426, gnl|fr1|chrUn (52075266-52075488) | |
| 198-426, gnl|galGal2|chr1 (15937599-15937805) | |
| 198-426, gnl|hg17|chr22 (48624379-48624634) | |
| 198-426, gnl|Hg17|chr22 (48624611-48624382) | |
| 198-426, gnl|mm7|chr15 (88896765-88897024) | |
| 198-426, gnl|Mm7|chr15 (88897014-88896780) | |
| 198-426, gnl|oryCun1|scaffold_173883 (72307-72557) | |
| 198-426, gnl|panTro1|chr23 (49044976-49045231) | |
| 198-426, gnl|rn3|chr7 (127153375-127153595) | |
| 198-426, gnl|tetNig1|chr19 (5126587-5126371) | |
| 198-426, gnl|xenTro1|scaffold_24 (3141364-3141588) | |
| 509-734, gnl|bosTau2|chr5 (76294312-76294537) | |
| 509-734, gnl|canFam2|chr10 (20286265-20286004) | |
| 509-734, gnl|danRer3|chr20 (56582524-56582294) | |
| 509-734, gnl|echTel1|scaffold_316962 (39453-39199) | |
| 509-734, gnl|fr1|chrUn (52074792-52075070) | |
| 509-734, gnl|galGal2|chr1 (15935476-15935764) | |
| 509-734, gnl|hg17|chr22 (48622201-48622480) | |
| 509-734, gnl|Hg17|chr22 (48622454-48622229) | |
| 509-734, gnl|mm7|chr15 (88893604-88893882) | |
| 509-734, gnl|Mm7|chr15 (88893856-88893631) | |
| 509-734, gnl|oryCun1|scaffold_173883 (69256-69533) | |
| 509-734, gnl|panTro1|chr23 (49042766-49043045) | |
| 509-734, gnl|rheMac2|chr10 (93871602-93871881) | |
| 509-734, gnl|rn3|chr7 (127150500-127150778) | |
| 509-734, gnl|tetNig1|chr19 (5127061-5126805) | |
| 509-734, gnl|xenTro1|scaffold_24 (3139292-3139546) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| nep (0.183925) |