Non-Coding RNA Search

Ss1.1-Mixn-0014m22.5

Sequence:


               
               GGCCCCCAGGCGCGCACAGCGCATTCAGCAGAGCTGGGCCGGGCCCGGAGGACGGGAGGA
GGAAAAGACTGAAATGAGAGGACTTGGAAAAGCGGGGACAAACGAAAACCCAATCCCACA
CACAATACTGTTAATAAACAGCGACTCTACACACACACTCCTTAAATAATAAAGTGACGC
GCTCTGCCCGCCGCCGCCGGCAGGACCGCTGCCCGAGGGGTGGAAGCTGACGCTTCAGAC
TCCTTCCCTCTATGTACAGGACAAAGAAAAAACCTGGCCCGGTCTTCTGGATAAAAGCTG
TTCAAAAACCCATGAGGGGCTCAAAGTGACAGGGTTGTTTCTTTAAATGGTTGACAGATG
TCGGTTTCTTTTTGTTCTGTTTAAACCGGACTGAACCCGGGTCAATCCTGCTGTTTGCTT
GCTCAAGCCCCAAGCCCAGGAGAAGGCTGCTCAATGATGCAAATCAGGACACCCCCCCAC
CGGCCCCCCGCAGACCTTGCCCCAGATTGTCAACCTCAGCAGCGAGAGCGGCTCTGAAGG
AGGAGGAGGAGGAGGAGGAAGGAGCCCGGCTCCTGCAGGCGCTGGGCCTTGGCCAGAGGA
CAGGGCGAGCCTGCCGCGTGGTGGCCGCCGGAGAGGCGCCTGGGCAGCCAGGCCCCCGTG
TCTACCAGGGGAGCGCCGACAGCGCAGCACTGGCAAAAGGCCCCCGAGGCTCGGGGAAGG
GCGGAGGGGCAGGAGATGGAGTTTAAGGCACACAGCAGGCGGCAGAGGAGGGGCTGCCGG
CCTCCCCAGGACAGAAGCGCCCCTCCCTCCTCGGAATGAACTCAACCGGGAGCAGGGGCC
CCCTGCAGTCAGGGCTGTCCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCCCAGGCGCGCACAGCGCATTCAGCAGAGCTGGGCCGGGCCCGGAGGACGGGAGGA
GGAAAAGACTGAAATGAGAGGACTTGGAAAAGCGGGGACAAACGAAAACCCAATCCCACA
CACAATACTGTTAATAAACAGCGACTCTACACACACACTCCTTAAATAATAAAGTGACGC
GCTCTGCCCGCCGCCGCCGGCAGGACCGCTGCCCGAGGGGTGGAAGCTGACGCTTCAGAC
TCCTTCCCTCTATGTACAGGACAAAGAAAAAACCTGGCCCGGTCTTCTGGATAAAAGCTG
TTCAAAAACCCATGAGGGGCTCAAAGTGACAGGGTTGTTTCTTTAAATGGTTGACAGATG
TCGGTTTCTTTTTGTTCTGTTTAAACCGGACTGAACCCGGGTCAATCCTGCTGTTTGCTT
GCTCAAGCCCCAAGCCCAGGAGAAGGCTGCTCAATGATGCAAATCAGGACACCCCCCCAC
CGGCCCCCCGCAGACCTTGCCCCAGATTGTCAACCTCAGCAGCGAGAGCGGCTCTGAAGG
AGGAGGAGGAGGAGGAGGAAGGAGCCCGGCTCCTGCAGGCGCTGGGCCTTGGCCAGAGGA
CAGGGCGAGCCTGCCGCGTGGTGGCCGCCGGAGAGGCGCCTGGGCAGCCAGGCCCCCGTG
TCTACCAGGGGAGCGCCGACAGCGCAGCACTGGCAAAAGGCCCCCGAGGCTCGGGGAAGG
GCGGAGGGGCAGGAGATGGAGTTTAAGGCACACAGCAGGCGGCAGAGGAGGGGCTGCCGG
CCTCCCCAGGACAGAAGCGCCCCTCCCTCCTCGGAATGAACTCAACCGGGAGCAGGGGCC
CCCTGCAGTCAGGGCTGTCCTGGC

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               25-459, gnl|bosTau2|chr11 (82150063-82150472)
               

               
               25-459, gnl|canFam2|chr9 (55907307-55906957)
               

               
               25-459, gnl|dasNov1|scaffold_1479 (100219-99653)
               

               
               25-459, gnl|hg17|chr9 (131482491-131483056)
               

               
               25-459, gnl|Hg17|chr9 (131482557-131483046)
               

               
               25-459, gnl|mm7|chr2 (29747032-29746556)
               

               
               25-459, gnl|Mm7|chr2 (29746985-29746564)
               

               
               25-459, gnl|monDom2|scaffold_51 (7088006-7088636)
               

               
               25-459, gnl|panTro1|chr11 (116361594-116362158)
               

               
               25-459, gnl|rheMac2|chr15 (7104120-7103553)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-459, gnl|bosTau2|chr11 (82150063-82150472)
               

               
               25-459, gnl|canFam2|chr9 (55907307-55906957)
               

               
               25-459, gnl|dasNov1|scaffold_1479 (100219-99653)
               

               
               25-459, gnl|hg17|chr9 (131482491-131483056)
               

               
               25-459, gnl|Hg17|chr9 (131482557-131483046)
               

               
               25-459, gnl|mm7|chr2 (29747032-29746556)
               

               
               25-459, gnl|Mm7|chr2 (29746985-29746564)
               

               
               25-459, gnl|monDom2|scaffold_51 (7088006-7088636)
               

               
               25-459, gnl|panTro1|chr11 (116361594-116362158)
               

               
               25-459, gnl|rheMac2|chr15 (7104120-7103553)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	25-459, gnl\|bosTau2\|chr11 (82150063-82150472)
	25-459, gnl\|canFam2\|chr9 (55907307-55906957)
	25-459, gnl\|dasNov1\|scaffold_1479 (100219-99653)
	25-459, gnl\|hg17\|chr9 (131482491-131483056)
	25-459, gnl\|Hg17\|chr9 (131482557-131483046)
	25-459, gnl\|mm7\|chr2 (29747032-29746556)
	25-459, gnl\|Mm7\|chr2 (29746985-29746564)
	25-459, gnl\|monDom2\|scaffold_51 (7088006-7088636)
	25-459, gnl\|panTro1\|chr11 (116361594-116362158)
	25-459, gnl\|rheMac2\|chr15 (7104120-7103553)