Non-Coding RNA Search

Ss1.1-Mixn-0014n01.5

Sequence:


               
               GCGATGTTTAATTGCTTCCTGCCTAATGTGTACATAGTAATTTCACTGGTTATTGGCTGT
TATTTGTTCAGAATTTATTGTATCTTGTTGCTATGTATGCAACTGAGTGTACGTAAAAGT
TTAGACTTCGGTACGTTATCTGCACAATTTTGTGTGCTTTAAATCTCTGTGAAATGTACA
GATGAATCATTATGGTGTGTTATATGTGACTTCCAATCTTGAAACAATAATATTTTGTAG
TATGTACTTTTGCAGACTATTTGAACATTTTAAACAGATATTGTAAATGGCCAGTACCCT
CAATCAAAACTAACTCTGGTAAGATGCATGCTTCTTGAGCCTACAGATTTATAAGAGGTC
AGGGGTAAACAAGAATTAAGATAATTTTTTTCTAATGGCAAGTATTTTTGATAATTTCCT
ACCTGCCTGATGTATTTGAAAGAAAAGTTGTCAACAGAAGAAATCTTAGCTATCAGAAGG
AAGGTTTCTTAAGTATTAAATAGCATTAATATACTTTATATCTAACTTGTTGAAATTTAG
TTCAAGGGTGAAGAACTCAAACATATTTTTGATTCTTCATATGACCTTTTGTTGTTTAAA
AGACAATTTTTGTCTTCAGTGTGGAGAAACGCCAGTTGAATAATAAACTTACAGAATTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGATGTTTAATTGCTTCCTGCCTAATGTGTACATAGTAATTTCACTGGTTATTGGCTGT
TATTTGTTCAGAATTTATTGTATCTTGTTGCTATGTATGCAACTGAGTGTACGTAAAAGT
TTAGACTTCGGTACGTTATCTGCACAATTTTGTGTGCTTTAAATCTCTGTGAAATGTACA
GATGAATCATTATGGTGTGTTATATGTGACTTCCAATCTTGAAACAATAATATTTTGTAG
TATGTACTTTTGCAGACTATTTGAACATTTTAAACAGATATTGTAAATGGCCAGTACCCT
CAATCAAAACTAACTCTGGTAAGATGCATGCTTCTTGAGCCTACAGATTTATAAGAGGTC
AGGGGTAAACAAGAATTAAGATAATTTTTTTCTAATGGCAAGTATTTTTGATAATTTCCT
ACCTGCCTGATGTATTTGAAAGAAAAGTTGTCAACAGAAGAAATCTTAGCTATCAGAAGG
AAGGTTTCTTAAGTATTAAATAGCATTAATATACTTTATATCTAACTTGTTGAAATTTAG
TTCAAGGGTGAAGAACTCAAACATATTTTTGATTCTTCATATGACCTTTTGTTGTTTAAA
AGACAATTTTTGTCTTCAGTGTGGAGAAACGCCAGTTGAATAATAAACTTACAGAATTGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-198, - strand, RNAz p=0.604115
               

               
               549-660, + strand, RNAz p=0.884776

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-198, - strand, RNAz p=0.604115
               

               
               549-660, + strand, RNAz p=0.884776

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-660, gnl|bosTau2|chr19 (1851690-1852368)
               

               
               1-660, gnl|canFam2|chr9 (34716523-34717084)
               

               
               1-660, gnl|dasNov1|scaffold_2718 (56520-55959)
               

               
               1-660, gnl|galGal2|chr18 (5969719-5970281)
               

               
               1-660, gnl|hg17|chr17 (51948698-51949249)
               

               
               1-660, gnl|Hg17|chr17 (51948706-51949373)
               

               
               1-660, gnl|loxAfr1|scaffold_12796 (70074-69510)
               

               
               1-660, gnl|mm7|chr11 (89496650-89496110)
               

               
               1-660, gnl|Mm7|chr11 (89496641-89495977)
               

               
               1-660, gnl|monDom2|scaffold_56 (7409303-7408754)
               

               
               1-660, gnl|oryCun1|scaffold_212077 (65993-65431)
               

               
               1-660, gnl|panTro1|chr19_random (37665338-37665889)
               

               
               1-660, gnl|rheMac2|chr16 (40729880-40730436)
               

               
               1-660, gnl|rn3|chr10 (77794957-77794421)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr19 (1851690-1852368)
               

               
               1-660, gnl|canFam2|chr9 (34716523-34717084)
               

               
               1-660, gnl|dasNov1|scaffold_2718 (56520-55959)
               

               
               1-660, gnl|galGal2|chr18 (5969719-5970281)
               

               
               1-660, gnl|hg17|chr17 (51948698-51949249)
               

               
               1-660, gnl|Hg17|chr17 (51948706-51949373)
               

               
               1-660, gnl|loxAfr1|scaffold_12796 (70074-69510)
               

               
               1-660, gnl|mm7|chr11 (89496650-89496110)
               

               
               1-660, gnl|Mm7|chr11 (89496641-89495977)
               

               
               1-660, gnl|monDom2|scaffold_56 (7409303-7408754)
               

               
               1-660, gnl|oryCun1|scaffold_212077 (65993-65431)
               

               
               1-660, gnl|panTro1|chr19_random (37665338-37665889)
               

               
               1-660, gnl|rheMac2|chr16 (40729880-40730436)
               

               
               1-660, gnl|rn3|chr10 (77794957-77794421)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               tra (0.246184)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)

	40-198, - strand, RNAz p=0.604115
	549-660, + strand, RNAz p=0.884776

	1-660, gnl\|bosTau2\|chr19 (1851690-1852368)
	1-660, gnl\|canFam2\|chr9 (34716523-34717084)
	1-660, gnl\|dasNov1\|scaffold_2718 (56520-55959)
	1-660, gnl\|galGal2\|chr18 (5969719-5970281)
	1-660, gnl\|hg17\|chr17 (51948698-51949249)
	1-660, gnl\|Hg17\|chr17 (51948706-51949373)
	1-660, gnl\|loxAfr1\|scaffold_12796 (70074-69510)
	1-660, gnl\|mm7\|chr11 (89496650-89496110)
	1-660, gnl\|Mm7\|chr11 (89496641-89495977)
	1-660, gnl\|monDom2\|scaffold_56 (7409303-7408754)
	1-660, gnl\|oryCun1\|scaffold_212077 (65993-65431)
	1-660, gnl\|panTro1\|chr19_random (37665338-37665889)
	1-660, gnl\|rheMac2\|chr16 (40729880-40730436)
	1-660, gnl\|rn3\|chr10 (77794957-77794421)