Non-Coding RNA Search

Ss1.1-Mixn-0014n03.5

Sequence:


               
               GGGGTTTTTAAAGGAAAACCGAAAGCCTGAACCCTTTTTTCTTCTTAAACTCTGGTTCCT
GTAATCCTCTGATTTTATTTTGCTTCTGCTTGGGGCGGGACGTGGGGGTGGCCGGACTTT
CTCCGGGGAGGTCTGCCGCTGATGGGGGCAGGGGGTTCGGACCGACTGGGTTCTTGGACA
GCGTGGGTGCCGTGACGGGCCTTGGGTCTCCTCTGCGTCCTTGGGCTCCAGAGCAGGGGA
TACAGATGAAAAAGGCCAGTTGGTTCAAGGATGGGAATTCCTTCGGGGAGCCTGGCTTTT
CGGCTCCAGATCTGGCTCTTTGGTGCCGCGTCCTGGCGGGCTGTGCTGGATCCTCGCCTT
TGCCTCCTCCCTCTGGGTCGTCTGCTCCTGTGCTCCTGACCTCCCTGGTCACGGGAGGGG
CCTGGAAATGAGTGACAAGGGAGACAAGAAGAGTCCTTCTTGAGAAGCTGGGATTTCCCC
TCGAGAACTCAGGCCTAGGGCTGGACTCTCTGTGTGACCAGGAGCAAGTCGCCTAAACCT
CCTGTGCCTCGATTTCCCCCTTCTGCAAAGTGGGGCCAAGGATTCTCATTTGTCAGCACT
CTTACTACCGAGCGCCGAATAAGGGCAAATCAGTCCCCTTTCTCCGCGTGTCTCTGTGCG
CGCACACTATCCACAGTCATGTAATCTCCACGGCTCGCTGTCCTTGATTCCCAAGTCGGG
TGGAGGGACGAGGGCAGGATAACCAGCCTGGGGCCTCTGGGGCCACCTGCCACACAGGTG
TTTGCTCAGCCACGTCCATGGGGCTAGGCGGGTAAAGCAGGACCAACTGGCAGATCTGTG
TGGGCTTTGGCCCGGAGGCTGGGCACGGTACCCCTTCCCCAACCCCTGTCTCAAACAGAA
CTGGTTGGGCAGCCCTGTCTTTGCTTCCCGTCCCTCTGGGTGGGCCAGGCTGGCTCCTGG
CTGTGGGAGAACCCCGTCCCCTGGGGACTGGGCGGGTGAGACAGGAGCTCTTTCAGGCTG
GGACTGGTGGGCATGTGGGGAGGGCAGCCGCTCTCTTCAGCAGGTGCACCCTCCAGCCCA
CGGGGTGACAGGGGGGCTCAGGGCTGCTTTTGGAGATGGGTGGGACCCCCGGTCCACACC
ACCCCAACCTGGGCTTCACTCCCCTTGGGGTCAAGGGCAGGGTCAGGGGACTGGAGACCT
GTTTGTTCTCAGAATAAATGTTACCGCTCTTCCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTTTTTAAAGGAAAACCGAAAGCCTGAACCCTTTTTTCTTCTTAAACTCTGGTTCCT
GTAATCCTCTGATTTTATTTTGCTTCTGCTTGGGGCGGGACGTGGGGGTGGCCGGACTTT
CTCCGGGGAGGTCTGCCGCTGATGGGGGCAGGGGGTTCGGACCGACTGGGTTCTTGGACA
GCGTGGGTGCCGTGACGGGCCTTGGGTCTCCTCTGCGTCCTTGGGCTCCAGAGCAGGGGA
TACAGATGAAAAAGGCCAGTTGGTTCAAGGATGGGAATTCCTTCGGGGAGCCTGGCTTTT
CGGCTCCAGATCTGGCTCTTTGGTGCCGCGTCCTGGCGGGCTGTGCTGGATCCTCGCCTT
TGCCTCCTCCCTCTGGGTCGTCTGCTCCTGTGCTCCTGACCTCCCTGGTCACGGGAGGGG
CCTGGAAATGAGTGACAAGGGAGACAAGAAGAGTCCTTCTTGAGAAGCTGGGATTTCCCC
TCGAGAACTCAGGCCTAGGGCTGGACTCTCTGTGTGACCAGGAGCAAGTCGCCTAAACCT
CCTGTGCCTCGATTTCCCCCTTCTGCAAAGTGGGGCCAAGGATTCTCATTTGTCAGCACT
CTTACTACCGAGCGCCGAATAAGGGCAAATCAGTCCCCTTTCTCCGCGTGTCTCTGTGCG
CGCACACTATCCACAGTCATGTAATCTCCACGGCTCGCTGTCCTTGATTCCCAAGTCGGG
TGGAGGGACGAGGGCAGGATAACCAGCCTGGGGCCTCTGGGGCCACCTGCCACACAGGTG
TTTGCTCAGCCACGTCCATGGGGCTAGGCGGGTAAAGCAGGACCAACTGGCAGATCTGTG
TGGGCTTTGGCCCGGAGGCTGGGCACGGTACCCCTTCCCCAACCCCTGTCTCAAACAGAA
CTGGTTGGGCAGCCCTGTCTTTGCTTCCCGTCCCTCTGGGTGGGCCAGGCTGGCTCCTGG
CTGTGGGAGAACCCCGTCCCCTGGGGACTGGGCGGGTGAGACAGGAGCTCTTTCAGGCTG
GGACTGGTGGGCATGTGGGGAGGGCAGCCGCTCTCTTCAGCAGGTGCACCCTCCAGCCCA
CGGGGTGACAGGGGGGCTCAGGGCTGCTTTTGGAGATGGGTGGGACCCCCGGTCCACACC
ACCCCAACCTGGGCTTCACTCCCCTTGGGGTCAAGGGCAGGGTCAGGGGACTGGAGACCT
GTTTGTTCTCAGAATAAATGTTACCGCTCTTCCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               840-1030, - strand, RNAz p=0.993103

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               840-1030, - strand, RNAz p=0.993103

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-135, gnl|bosTau2|chr15 (35568290-35568423)
               

               
               1-135, gnl|Mm7|chr7 (94154647-94154510)
               


               
               272-1234, gnl|bosTau2|chr15 (35568606-35569539)
               

               
               272-1234, gnl|Hg17|chr11 (76513911-76514845)
               

               
               272-1234, gnl|Mm7|chr7 (94154340-94153467)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-135, gnl|bosTau2|chr15 (35568290-35568423)
               

               
               1-135, gnl|Mm7|chr7 (94154647-94154510)
               


               
               272-1234, gnl|bosTau2|chr15 (35568606-35569539)
               

               
               272-1234, gnl|Hg17|chr11 (76513911-76514845)
               

               
               272-1234, gnl|Mm7|chr7 (94154340-94153467)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nje (0.16592)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nje (0.16592)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

	1-135, gnl\|bosTau2\|chr15 (35568290-35568423)
	1-135, gnl\|Mm7\|chr7 (94154647-94154510)

	272-1234, gnl\|bosTau2\|chr15 (35568606-35569539)
	272-1234, gnl\|Hg17\|chr11 (76513911-76514845)
	272-1234, gnl\|Mm7\|chr7 (94154340-94153467)

	fcc (0.197785)
	nlu (0.191681)
	nje (0.16592)
	ute (0.132784)
	ese (0.126502)
	eru (0.120048)
	clu (0.119646)
	jej (0.0989218)