Non-Coding RNA Search

Ss1.1-Mixn-0014n18.5

Sequence:


               
               CGGGAGCTCCACGTTTGCTGTTACTTCTCCTGTTCCTCTCCACTCTGGTAACTCAAAGGC
AGCTTCAAGACCTATTCCTTCAGAGCACTTGTCTTAATAGTCTCCATCAGAGATGGGTTT
GTTGTGGTGCTCCAGGGCTTGGTGTGAGACCATTTCCTATTCCATGAACGCTGAAGACAT
AGTGGAAATAATCCTGGCCTTTCCAGCCTGATAGCGAGCCTGAGAGTTAGAAACTGGGCT
CCCATCCAATCATTCAGAGCCAATGACAAATTGTAAAGCTATCAGAAAACTGGATCCTGG
CCTTGGGATGGGTGGGGTGATTCACAGACAAGCTTTCCCAGGGAATTGTGGTCGTCCCAG
GTCATTTGGGGACTGGAGGGGGAGGATGCCAGGCCTGCCCTCCTACTGCAGTTGTGGCCT
GTTCTTGCTCAGCCTGTCCCCGAGTGGGTCCTAGTTCATGGCCCTTTCACATTGGCCATT
TTCATCGCATTCTAGGATGAAAGCGGCCTTGGGTTTGCAGTGGAGGAAGGAAACATTTCA
AAGGAAAGCATGTGTGTTTAAGTCTTTGTGCTTATTGTCTGTTAGCTCTGTGACCTTGGT
CTTGTGGCTTCTTTCAGCCTCACTCTCCTGTCTGTAAAATGCTGATACTTTGTAGAATTG
TGAGAATTAAATAAGATTACCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAGCTCCACGTTTGCTGTTACTTCTCCTGTTCCTCTCCACTCTGGTAACTCAAAGGC
AGCTTCAAGACCTATTCCTTCAGAGCACTTGTCTTAATAGTCTCCATCAGAGATGGGTTT
GTTGTGGTGCTCCAGGGCTTGGTGTGAGACCATTTCCTATTCCATGAACGCTGAAGACAT
AGTGGAAATAATCCTGGCCTTTCCAGCCTGATAGCGAGCCTGAGAGTTAGAAACTGGGCT
CCCATCCAATCATTCAGAGCCAATGACAAATTGTAAAGCTATCAGAAAACTGGATCCTGG
CCTTGGGATGGGTGGGGTGATTCACAGACAAGCTTTCCCAGGGAATTGTGGTCGTCCCAG
GTCATTTGGGGACTGGAGGGGGAGGATGCCAGGCCTGCCCTCCTACTGCAGTTGTGGCCT
GTTCTTGCTCAGCCTGTCCCCGAGTGGGTCCTAGTTCATGGCCCTTTCACATTGGCCATT
TTCATCGCATTCTAGGATGAAAGCGGCCTTGGGTTTGCAGTGGAGGAAGGAAACATTTCA
AAGGAAAGCATGTGTGTTTAAGTCTTTGTGCTTATTGTCTGTTAGCTCTGTGACCTTGGT
CTTGTGGCTTCTTTCAGCCTCACTCTCCTGTCTGTAAAATGCTGATACTTTGTAGAATTG
TGAGAATTAAATAAGATTACCATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               363-473, + strand, RNAz p=0.692382

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               363-473, + strand, RNAz p=0.692382

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-680, gnl|bosTau2|chr29 (21789683-21790356)
               

               
               11-680, gnl|Hg17|chr11 (125796194-125796891)
               

               
               11-680, gnl|Mm7|chr9 (34934239-34933605)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-680, gnl|bosTau2|chr29 (21789683-21790356)
               

               
               11-680, gnl|Hg17|chr11 (125796194-125796891)
               

               
               11-680, gnl|Mm7|chr9 (34934239-34933605)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               elu (0.385356)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)

	11-680, gnl\|bosTau2\|chr29 (21789683-21790356)
	11-680, gnl\|Hg17\|chr11 (125796194-125796891)
	11-680, gnl\|Mm7\|chr9 (34934239-34933605)