Non-Coding RNA Search

Ss1.1-Mixn-0014p23.5

Sequence:


               
               TTACACCTATGAAGAAGGATTATCCCATTTGACAGCAGAAGGCCAAGCCACGTTGGAGAG
ATTAGAAGGAATGCTTTCGCAGTCTGTGAGCAGCCAGTACAACATGGCTGGAGTCCGGAC
AGAAGATTCAATAAGAGATTATGAAGATGGGATGGAGGTAGATACTACACCAACAGTTGC
TGGACAGTTTGAGGATGCAGATGTTGATCACTGAGAATCATCGATGCTGCTTTGGGATTC
TGCTCATAACTATAGGAGAGAACTTGGTACTTCTTCCACTGAGGAGTGGGTGTCGGTGAA
AGTCTTTTTTCCTTCTCCAAAACTTTCCTGAACCAGTTCTTTCCTGAGACAGACTTTACT
GAGACAAGTTGTTCCCAGCAGAAGAAACGATGACCTTTATTAACGAAGGTGAATTAACTT
AACCAAGAGGATATTTGTAGTTGATCAGTTTACCCCAAAACCAGGTGTACCCTCTGAATC
GGCCTGTAATTCCTGCCTTTACTGTCTGCTCCCTCCTAACCCAGCAGGAAATGTCCTGGC
CCTTGAAGGTGCAGGTTGACTGTGTGGAAAAAAGAGAGGCCAAATGTAGGATAGACGCCT
TAGGGCCTAAGGATCCATTGCTCCTTACAAGAGAAAAAAAGATCTCAGAGACATCCTGGC
TCTACTTAGTCTCCACAGGGAGAAGGGTCTTTTTACTAATTGGGGACCCAGAGTAATCAA
CTTTAAGGGAGCCTCTTCAGAAATATTCCAGCCACACATACTTCCACTCACACGAGTTCT
TCTGTCCAGGCTTTGCTCCTTGCCCTGTGTTCCACCAGCCTGTTCTGTCCTAACGTATTA
GGTTATATCCTTTAATTTCCAACCTCCATAGGTCAGTTTCCGTAAAAGAAGAGGTGAAAT
TGGGATGAAGTCCTCAAAGTTTTTCCGATAATCGTTTTGTCTTTGTAATAGCTTAACAAA
TAAATTTAGGTTTTCTATAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACACCTATGAAGAAGGATTATCCCATTTGACAGCAGAAGGCCAAGCCACGTTGGAGAG
ATTAGAAGGAATGCTTTCGCAGTCTGTGAGCAGCCAGTACAACATGGCTGGAGTCCGGAC
AGAAGATTCAATAAGAGATTATGAAGATGGGATGGAGGTAGATACTACACCAACAGTTGC
TGGACAGTTTGAGGATGCAGATGTTGATCACTGAGAATCATCGATGCTGCTTTGGGATTC
TGCTCATAACTATAGGAGAGAACTTGGTACTTCTTCCACTGAGGAGTGGGTGTCGGTGAA
AGTCTTTTTTCCTTCTCCAAAACTTTCCTGAACCAGTTCTTTCCTGAGACAGACTTTACT
GAGACAAGTTGTTCCCAGCAGAAGAAACGATGACCTTTATTAACGAAGGTGAATTAACTT
AACCAAGAGGATATTTGTAGTTGATCAGTTTACCCCAAAACCAGGTGTACCCTCTGAATC
GGCCTGTAATTCCTGCCTTTACTGTCTGCTCCCTCCTAACCCAGCAGGAAATGTCCTGGC
CCTTGAAGGTGCAGGTTGACTGTGTGGAAAAAAGAGAGGCCAAATGTAGGATAGACGCCT
TAGGGCCTAAGGATCCATTGCTCCTTACAAGAGAAAAAAAGATCTCAGAGACATCCTGGC
TCTACTTAGTCTCCACAGGGAGAAGGGTCTTTTTACTAATTGGGGACCCAGAGTAATCAA
CTTTAAGGGAGCCTCTTCAGAAATATTCCAGCCACACATACTTCCACTCACACGAGTTCT
TCTGTCCAGGCTTTGCTCCTTGCCCTGTGTTCCACCAGCCTGTTCTGTCCTAACGTATTA
GGTTATATCCTTTAATTTCCAACCTCCATAGGTCAGTTTCCGTAAAAGAAGAGGTGAAAT
TGGGATGAAGTCCTCAAAGTTTTTCCGATAATCGTTTTGTCTTTGTAATAGCTTAACAAA
TAAATTTAGGTTTTCTATAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|7959827|gb|AAF71084.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|7959827|gb|AAF71084.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               240-359, - strand, RNAz p=0.998286
               

               
               577-732, + strand, RNAz p=0.964795

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, - strand, RNAz p=0.998286
               

               
               577-732, + strand, RNAz p=0.964795

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               1-992, gnl|bosTau2|chr10 (33650949-33651962)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-992, gnl|bosTau2|chr10 (33650949-33651962)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               thg (0.380373)
               

               
               bla (0.373042)
               

               
               fbs (0.350693)
               

               
               duo (0.345602)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               thg (0.380373)
               

               
               bla (0.373042)
               

               
               fbs (0.350693)
               

               
               duo (0.345602)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	240-359, - strand, RNAz p=0.998286
	577-732, + strand, RNAz p=0.964795

	pro (0.512033)
	thg (0.380373)
	bla (0.373042)
	fbs (0.350693)
	duo (0.345602)
	mgp (0.230681)
	tes (0.207814)
	hea (0.204499)
	fty (0.17584)
	sin (0.174948)
	mcp (0.170648)
	cag (0.151194)
	isp (0.150376)
	fat (0.147427)
	pty (0.142714)
	ssp (0.13552)
	lyg (0.133103)
	tra (0.123092)
	clu (0.119646)
	cbl (0.114797)
	spc (0.113366)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)