Non-Coding RNA Search

Ss1.1-Mixn-0015a15.5

Sequence:


               
               TCGGGGGAGGCGTCGGTTGGGTCCCTCCTGCTGCTATCTCCCCAGGACATCTCGGACCCA
CCTCTTACCCCCTCCCAAACTCTACCTAATTCTCAGCTGCCCCCAGAGCACCAGGGCAGC
TAGCCAGCTCTAGTATCAGGAGACCAAGGGACCGGAGTGCGTAATGGAGGGTGATCAGGT
CCCCATGTGGGTGTCCTAATTCCAAAGCCAACTCTCCTTTGTCACCTGAAGGCCTTCTTT
TGAGGTATTGACAACTTCACCACCTCAGGAGCTGGGAAACTCATGGAGGAGGAAAAAATT
CAAACCATTCTACCTCCTGGGGTGAGGGGGGAAAAAAATGGGAAGGGGAGGAGGGAGTGG
GGTGTGCTTGGCACTGACCTTGCTCCAGGATGGAATGGCAGCAGGGGAATGTCACAGGTC
AGCAGCCTGGGCCCCTGGCTATGAATAGCGACCAAAGGCGCCTGGCCATCCAGCAAAGGG
TCTCAGCTGCCTGGGTGGCGGCACCTGGCACACTGTGACTGGCCAGCATTATGTTAACCC
TTCCTAAGTCCCCGAGAAACCGGGCAGGGAGGCTCCTCTCAGCCCCTAGCCCTTGAGAAG
TCAGTCTTAGCAGTGAAGGGCAGAGCTGCCTGGGGGGGCACAGTCACTCCAGAGGTGGCT
GGGATCTAGAGCTGCCTCCCCAGGAAGTCAAAGTCAAGACGGAAAGACAGCTCCCTTCCC
TAGGCTGCAGCTGCGACCCTCTTAGATAGTCAAAAACCTCTGCCTACTTTTGCTTGCTTA
CTCCTCAGTTAACAGAATCTCAGGCCTTCGCATCAGGCCCACTTGTCTACCCAATAAAGT
GTTTTTTCCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGGGGAGGCGTCGGTTGGGTCCCTCCTGCTGCTATCTCCCCAGGACATCTCGGACCCA
CCTCTTACCCCCTCCCAAACTCTACCTAATTCTCAGCTGCCCCCAGAGCACCAGGGCAGC
TAGCCAGCTCTAGTATCAGGAGACCAAGGGACCGGAGTGCGTAATGGAGGGTGATCAGGT
CCCCATGTGGGTGTCCTAATTCCAAAGCCAACTCTCCTTTGTCACCTGAAGGCCTTCTTT
TGAGGTATTGACAACTTCACCACCTCAGGAGCTGGGAAACTCATGGAGGAGGAAAAAATT
CAAACCATTCTACCTCCTGGGGTGAGGGGGGAAAAAAATGGGAAGGGGAGGAGGGAGTGG
GGTGTGCTTGGCACTGACCTTGCTCCAGGATGGAATGGCAGCAGGGGAATGTCACAGGTC
AGCAGCCTGGGCCCCTGGCTATGAATAGCGACCAAAGGCGCCTGGCCATCCAGCAAAGGG
TCTCAGCTGCCTGGGTGGCGGCACCTGGCACACTGTGACTGGCCAGCATTATGTTAACCC
TTCCTAAGTCCCCGAGAAACCGGGCAGGGAGGCTCCTCTCAGCCCCTAGCCCTTGAGAAG
TCAGTCTTAGCAGTGAAGGGCAGAGCTGCCTGGGGGGGCACAGTCACTCCAGAGGTGGCT
GGGATCTAGAGCTGCCTCCCCAGGAAGTCAAAGTCAAGACGGAAAGACAGCTCCCTTCCC
TAGGCTGCAGCTGCGACCCTCTTAGATAGTCAAAAACCTCTGCCTACTTTTGCTTGCTTA
CTCCTCAGTTAACAGAATCTCAGGCCTTCGCATCAGGCCCACTTGTCTACCCAATAAAGT
GTTTTTTCCAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               276-394, - strand, RNAz p=0.67678

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-394, - strand, RNAz p=0.67678

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-852, gnl|bosTau2|chr5 (23023771-23022945)
               

               
               3-852, gnl|Hg17|chr12 (48790485-48791361)
               

               
               3-852, gnl|Mm7|chr15 (99709378-99710251)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-852, gnl|bosTau2|chr5 (23023771-23022945)
               

               
               3-852, gnl|Hg17|chr12 (48790485-48791361)
               

               
               3-852, gnl|Mm7|chr15 (99709378-99710251)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	3-852, gnl\|bosTau2\|chr5 (23023771-23022945)
	3-852, gnl\|Hg17\|chr12 (48790485-48791361)
	3-852, gnl\|Mm7\|chr15 (99709378-99710251)