Non-Coding RNA Search

Ss1.1-Mixn-0015a21.5

Sequence:


               
               ACAGCCATTGTTCTTGGCAGACAGACCTGCTCTCTCTCCCCGAGGCCATGAGGCGCTTTG
TGTTCTAACTGGATCTGCACAAACGTGGGGAGAGGCGACTGAGCCAGAGGCCAACGGCAG
AGGAGTTGGAGCAGAGGAACATTTTGAAACCTCGGAATGAACAAGAGGAACAAGAGGAGA
AAAGAGAGATCAAGAGGAGGTTAACTCGGAAGCTCAGCCAGCGGCCCACAGTGGAGGAGC
TCCGGGAACGGAAGATCCTCATCCGCTTCAGCGACTACGTGGAGGTGGCCGACGCTCAGG
ACTACGACCGCAGGGCCGACAAGCCGTGGACCCGCCTCACCGCTGCCGACAAAGCTGCCA
TTCGAAAGGAGCTCAATGAATTTAAAAGCACTGAAATGGAAGTTCACGAATTGAGTAGAC
ATTTAACAAGATTTCACCGACCTTAACCGTTGACCTCCTCTTGAGTGCTATGCCGTCTTC
AAAACATAAATTTATAAGAACCATAAGTGCTGGTATTTATTCACTTCCCCATTACGATGT
AAATCTTCTGAACTGCCTTTTTTTAAAAGAAGAAGAAGAAGAAGAGGAAACACAATCAGG
ATTCCGCTTGCAAATACTCGATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCCATTGTTCTTGGCAGACAGACCTGCTCTCTCTCCCCGAGGCCATGAGGCGCTTTG
TGTTCTAACTGGATCTGCACAAACGTGGGGAGAGGCGACTGAGCCAGAGGCCAACGGCAG
AGGAGTTGGAGCAGAGGAACATTTTGAAACCTCGGAATGAACAAGAGGAACAAGAGGAGA
AAAGAGAGATCAAGAGGAGGTTAACTCGGAAGCTCAGCCAGCGGCCCACAGTGGAGGAGC
TCCGGGAACGGAAGATCCTCATCCGCTTCAGCGACTACGTGGAGGTGGCCGACGCTCAGG
ACTACGACCGCAGGGCCGACAAGCCGTGGACCCGCCTCACCGCTGCCGACAAAGCTGCCA
TTCGAAAGGAGCTCAATGAATTTAAAAGCACTGAAATGGAAGTTCACGAATTGAGTAGAC
ATTTAACAAGATTTCACCGACCTTAACCGTTGACCTCCTCTTGAGTGCTATGCCGTCTTC
AAAACATAAATTTATAAGAACCATAAGTGCTGGTATTTATTCACTTCCCCATTACGATGT
AAATCTTCTGAACTGCCTTTTTTTAAAAGAAGAAGAAGAAGAAGAGGAAACACAATCAGG
ATTCCGCTTGCAAATACTCGATGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|54144637|ref|NP_001005748.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|54144637|ref|NP_001005748.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               211-354, gnl|bosTau2|chr23 (38570564-38570707)
               

               
               211-354, gnl|Hg17|chr6 (13391631-13391774)
               

               
               211-354, gnl|Mm7|chr13 (42573184-42573327)
               


               
               429-624, gnl|bosTau2|chr23 (38572400-38572592)
               

               
               429-624, gnl|Hg17|chr6 (13395272-13395465)
               

               
               429-624, gnl|Mm7|chr13 (42575438-42575706)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-354, gnl|bosTau2|chr23 (38570564-38570707)
               

               
               211-354, gnl|Hg17|chr6 (13391631-13391774)
               

               
               211-354, gnl|Mm7|chr13 (42573184-42573327)
               


               
               429-624, gnl|bosTau2|chr23 (38572400-38572592)
               

               
               429-624, gnl|Hg17|chr6 (13395272-13395465)
               

               
               429-624, gnl|Mm7|chr13 (42575438-42575706)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cte (0.58548)
               

               
               tes (0.415628)
               

               
               fce (0.271592)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               tes (0.415628)
               

               
               fce (0.271592)

	211-354, gnl\|bosTau2\|chr23 (38570564-38570707)
	211-354, gnl\|Hg17\|chr6 (13391631-13391774)
	211-354, gnl\|Mm7\|chr13 (42573184-42573327)

	429-624, gnl\|bosTau2\|chr23 (38572400-38572592)
	429-624, gnl\|Hg17\|chr6 (13395272-13395465)
	429-624, gnl\|Mm7\|chr13 (42575438-42575706)